miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5413 5' -63 NC_001798.1 + 23885 0.66 0.618642
Target:  5'- gGCGCCCgaggCgGAGGAGGCgCGggcCCgguucgaggCCUCg -3'
miRNA:   3'- -CGUGGG----GgCUCCUCCG-GCa--GGa--------GGAG- -5'
5413 5' -63 NC_001798.1 + 86441 0.66 0.628367
Target:  5'- gGCGCagCCCGGGGAcgggGGCCGguucgugagCCUgCUUCg -3'
miRNA:   3'- -CGUGg-GGGCUCCU----CCGGCa--------GGA-GGAG- -5'
5413 5' -63 NC_001798.1 + 97032 0.67 0.570278
Target:  5'- uCugUCCgCGAGGAGGCCGacgcCCUgCUg -3'
miRNA:   3'- cGugGGG-GCUCCUCCGGCa---GGAgGAg -5'
5413 5' -63 NC_001798.1 + 70470 0.67 0.522888
Target:  5'- -gACCCCCGAGGcGGCCuUCCg---- -3'
miRNA:   3'- cgUGGGGGCUCCuCCGGcAGGaggag -5'
5413 5' -63 NC_001798.1 + 104317 0.67 0.570278
Target:  5'- cGC-CCCCCGAGcGAuGGCC-UCCgCCg- -3'
miRNA:   3'- -CGuGGGGGCUC-CU-CCGGcAGGaGGag -5'
5413 5' -63 NC_001798.1 + 52158 0.67 0.528502
Target:  5'- cGUGCUCCCGcGGGAGGCCGcguuugcggggcgCgUCCUg -3'
miRNA:   3'- -CGUGGGGGC-UCCUCCGGCa------------GgAGGAg -5'
5413 5' -63 NC_001798.1 + 80237 0.67 0.532257
Target:  5'- gGC-CCCCCGAcccGGGGCC-UCCUgUUCg -3'
miRNA:   3'- -CGuGGGGGCUc--CUCCGGcAGGAgGAG- -5'
5413 5' -63 NC_001798.1 + 15118 0.67 0.536021
Target:  5'- gGCGCugucgucguCCUCGGGGGGuucGCCGUCCccggcgcccucaaacUCCUCg -3'
miRNA:   3'- -CGUG---------GGGGCUCCUC---CGGCAGG---------------AGGAG- -5'
5413 5' -63 NC_001798.1 + 147066 0.67 0.541684
Target:  5'- -gGCCCCCGcaccucGGcGGCCGcCC-CCUCc -3'
miRNA:   3'- cgUGGGGGCu-----CCuCCGGCaGGaGGAG- -5'
5413 5' -63 NC_001798.1 + 77091 0.67 0.541684
Target:  5'- aCGCCCCCGAGac-GCCGgUCCUCgUg -3'
miRNA:   3'- cGUGGGGGCUCcucCGGC-AGGAGgAg -5'
5413 5' -63 NC_001798.1 + 122138 0.67 0.545471
Target:  5'- -gGCCCCCGGGccgcgggcGAGGaCGUCCUcaacgacgugcucacCCUCg -3'
miRNA:   3'- cgUGGGGGCUC--------CUCCgGCAGGA---------------GGAG- -5'
5413 5' -63 NC_001798.1 + 66876 0.67 0.554975
Target:  5'- gGCGCCggggcuugggaaaggCCaCGGGGgcgGGGCCGUCgCUCCa- -3'
miRNA:   3'- -CGUGG---------------GG-GCUCC---UCCGGCAG-GAGGag -5'
5413 5' -63 NC_001798.1 + 53610 0.67 0.551167
Target:  5'- cGCGCCCCguucaaGAGcGGGGCCG-CCgcggCCa- -3'
miRNA:   3'- -CGUGGGGg-----CUC-CUCCGGCaGGa---GGag -5'
5413 5' -63 NC_001798.1 + 31 0.67 0.5607
Target:  5'- -aACCCCCGGGGGGGgUGUUUUUUg- -3'
miRNA:   3'- cgUGGGGGCUCCUCCgGCAGGAGGag -5'
5413 5' -63 NC_001798.1 + 154369 0.67 0.5607
Target:  5'- -aACCCCCGGGGGGGgUGUUUUUUg- -3'
miRNA:   3'- cgUGGGGGCUCCUCCgGCAGGAGGag -5'
5413 5' -63 NC_001798.1 + 4628 0.67 0.570278
Target:  5'- cGCGCUCCgGGGGGGGCgacgggauCGUgCgaacggCCUCg -3'
miRNA:   3'- -CGUGGGGgCUCCUCCG--------GCAgGa-----GGAG- -5'
5413 5' -63 NC_001798.1 + 143 0.67 0.570278
Target:  5'- cGCuCCCCCGcGGGcGCCG-CC-CCUCc -3'
miRNA:   3'- -CGuGGGGGCuCCUcCGGCaGGaGGAG- -5'
5413 5' -63 NC_001798.1 + 73011 0.67 0.570278
Target:  5'- cGCGCCCCCcAGcccGGCCGcagaCCUCgUCg -3'
miRNA:   3'- -CGUGGGGGcUCcu-CCGGCa---GGAGgAG- -5'
5413 5' -63 NC_001798.1 + 81981 0.67 0.570278
Target:  5'- cCGCCCgCCGaAGGAgcGGUCGUCC-CCg- -3'
miRNA:   3'- cGUGGG-GGC-UCCU--CCGGCAGGaGGag -5'
5413 5' -63 NC_001798.1 + 154481 0.67 0.570278
Target:  5'- cGCuCCCCCGcGGGcGCCG-CC-CCUCc -3'
miRNA:   3'- -CGuGGGGGCuCCUcCGGCaGGaGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.