miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5413 5' -63 NC_001798.1 + 57240 0.77 0.130838
Target:  5'- -gGCCCCCGGGcGGGGCCGacacguuuaccaucaCCUCCUCu -3'
miRNA:   3'- cgUGGGGGCUC-CUCCGGCa--------------GGAGGAG- -5'
5413 5' -63 NC_001798.1 + 32074 0.76 0.175185
Target:  5'- cGCGCCCCCGucGGcgucuccgucgucccAGGCCGcggucgccgccgccUCCUCCUCc -3'
miRNA:   3'- -CGUGGGGGCu-CC---------------UCCGGC--------------AGGAGGAG- -5'
5413 5' -63 NC_001798.1 + 124136 0.75 0.201578
Target:  5'- cGCGCCCCCGccguggcGGAGGCCuGUCCcugCgUCg -3'
miRNA:   3'- -CGUGGGGGCu------CCUCCGG-CAGGa--GgAG- -5'
5413 5' -63 NC_001798.1 + 4139 0.74 0.210786
Target:  5'- cCGCCCCCGGGGcccucgcGGGCacccccgCCUCCUCg -3'
miRNA:   3'- cGUGGGGGCUCC-------UCCGgca----GGAGGAG- -5'
5413 5' -63 NC_001798.1 + 123456 0.73 0.242822
Target:  5'- cGCGCCCCCGAcccGGGGcccgaaGCCGaCCUCgUCg -3'
miRNA:   3'- -CGUGGGGGCU---CCUC------CGGCaGGAGgAG- -5'
5413 5' -63 NC_001798.1 + 89413 0.73 0.270798
Target:  5'- --cCCCCCGAGGcacGGCCGggcgcuugggcgCCUCCUUg -3'
miRNA:   3'- cguGGGGGCUCCu--CCGGCa-----------GGAGGAG- -5'
5413 5' -63 NC_001798.1 + 135047 0.72 0.284463
Target:  5'- -gGCCUCgGAGGcGGCCGgccgCCUCCUg -3'
miRNA:   3'- cgUGGGGgCUCCuCCGGCa---GGAGGAg -5'
5413 5' -63 NC_001798.1 + 91117 0.72 0.297354
Target:  5'- cGCugCUCCGcGGGGG-CGUCCUCgUCc -3'
miRNA:   3'- -CGugGGGGCuCCUCCgGCAGGAGgAG- -5'
5413 5' -63 NC_001798.1 + 3785 0.71 0.324484
Target:  5'- gGCGCCggggcgCCCGAGGccucgaaccGGGCCcgcgCCUCCUCc -3'
miRNA:   3'- -CGUGG------GGGCUCC---------UCCGGca--GGAGGAG- -5'
5413 5' -63 NC_001798.1 + 81786 0.71 0.353414
Target:  5'- cGCccCCCCCGAGGGGuGgCGUCCgCCg- -3'
miRNA:   3'- -CGu-GGGGGCUCCUC-CgGCAGGaGGag -5'
5413 5' -63 NC_001798.1 + 31474 0.71 0.353414
Target:  5'- cGCGCcgCCCCGcGGGccccGGGCCGcucuccuuugucUCCUCCUCc -3'
miRNA:   3'- -CGUG--GGGGC-UCC----UCCGGC------------AGGAGGAG- -5'
5413 5' -63 NC_001798.1 + 146983 0.7 0.360925
Target:  5'- cGCGCCUCCGAGGGuccGCC-UCUUgCCUCg -3'
miRNA:   3'- -CGUGGGGGCUCCUc--CGGcAGGA-GGAG- -5'
5413 5' -63 NC_001798.1 + 40816 0.7 0.368547
Target:  5'- aGCGCCCCCu-GGGGGCCG-CUgguUCCg- -3'
miRNA:   3'- -CGUGGGGGcuCCUCCGGCaGG---AGGag -5'
5413 5' -63 NC_001798.1 + 3885 0.7 0.368547
Target:  5'- cGCGCCCCgGgggcGGGGGGCCGgCC-CCg- -3'
miRNA:   3'- -CGUGGGGgC----UCCUCCGGCaGGaGGag -5'
5413 5' -63 NC_001798.1 + 22964 0.7 0.375501
Target:  5'- gGCGgCCCCGgcguccgGGGAGGCCGUCgacgagCCUg -3'
miRNA:   3'- -CGUgGGGGC-------UCCUCCGGCAGga----GGAg -5'
5413 5' -63 NC_001798.1 + 63952 0.7 0.38333
Target:  5'- uCGCCCUCGGagagcuuGGAGa-CGUCCUCCUCg -3'
miRNA:   3'- cGUGGGGGCU-------CCUCcgGCAGGAGGAG- -5'
5413 5' -63 NC_001798.1 + 150158 0.7 0.384119
Target:  5'- cGCGCCUcuuCCGGGGgcGGGCCGccgCCcCCUCc -3'
miRNA:   3'- -CGUGGG---GGCUCC--UCCGGCa--GGaGGAG- -5'
5413 5' -63 NC_001798.1 + 88959 0.7 0.400121
Target:  5'- uGUugCUugUCGAGGAGGaCGgCCUCCUCg -3'
miRNA:   3'- -CGugGG--GGCUCCUCCgGCaGGAGGAG- -5'
5413 5' -63 NC_001798.1 + 27565 0.7 0.400121
Target:  5'- gGCGCCCgCGGGGGagcGGCCGg-CUCCg- -3'
miRNA:   3'- -CGUGGGgGCUCCU---CCGGCagGAGGag -5'
5413 5' -63 NC_001798.1 + 109704 0.7 0.400121
Target:  5'- cGCGCCCUCGgccgagcagcGGGAacgcgcccGCCGgggCCUCCUCa -3'
miRNA:   3'- -CGUGGGGGC----------UCCUc-------CGGCa--GGAGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.