miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5413 5' -63 NC_001798.1 + 150643 0.7 0.40828
Target:  5'- gGCugUCUCGcGGGGGgCGUCCUgcCCUCc -3'
miRNA:   3'- -CGugGGGGCuCCUCCgGCAGGA--GGAG- -5'
5413 5' -63 NC_001798.1 + 16175 0.7 0.411573
Target:  5'- gGCGgCCCgCGGGGAccggggggacgcacgGGCCGcCCUCCg- -3'
miRNA:   3'- -CGUgGGG-GCUCCU---------------CCGGCaGGAGGag -5'
5413 5' -63 NC_001798.1 + 76361 0.69 0.424906
Target:  5'- -uGCCCCCGAGGAccuGGCgG-CCUggcUCUCg -3'
miRNA:   3'- cgUGGGGGCUCCU---CCGgCaGGA---GGAG- -5'
5413 5' -63 NC_001798.1 + 122384 0.69 0.424906
Target:  5'- cGC-CCCCCGc---GGCUGUCCUCCg- -3'
miRNA:   3'- -CGuGGGGGCuccuCCGGCAGGAGGag -5'
5413 5' -63 NC_001798.1 + 26180 0.69 0.433369
Target:  5'- cGUGCUCCCGGcgcuGGAcGGCCGggCCgccgCCUCg -3'
miRNA:   3'- -CGUGGGGGCU----CCU-CCGGCa-GGa---GGAG- -5'
5413 5' -63 NC_001798.1 + 124424 0.69 0.441929
Target:  5'- aGCugCCCCGcGGucgcgcGGGCCGUggCCagagCCUCa -3'
miRNA:   3'- -CGugGGGGCuCC------UCCGGCA--GGa---GGAG- -5'
5413 5' -63 NC_001798.1 + 81658 0.69 0.450584
Target:  5'- aGUcCCCCCGcGGAuGCCGcgCUUCCUCc -3'
miRNA:   3'- -CGuGGGGGCuCCUcCGGCa-GGAGGAG- -5'
5413 5' -63 NC_001798.1 + 52632 0.68 0.468169
Target:  5'- -gGCCCCCGAGGuGGGCaCGUacacCCcCCUg -3'
miRNA:   3'- cgUGGGGGCUCC-UCCG-GCA----GGaGGAg -5'
5413 5' -63 NC_001798.1 + 39539 0.68 0.468169
Target:  5'- cGCGCCUcgCCGuGGguggcgccgGGGCCGUCCgUCCg- -3'
miRNA:   3'- -CGUGGG--GGCuCC---------UCCGGCAGG-AGGag -5'
5413 5' -63 NC_001798.1 + 71108 0.68 0.470837
Target:  5'- cGCGCCCCCGGGGacgcugauggcgcGcgugcggacggacgcGGCCGUCUUCg-- -3'
miRNA:   3'- -CGUGGGGGCUCC-------------U---------------CCGGCAGGAGgag -5'
5413 5' -63 NC_001798.1 + 117024 0.68 0.477092
Target:  5'- gGUcCCCCCGGcccuGGGGGCCaacuacUUCUCCUCc -3'
miRNA:   3'- -CGuGGGGGCU----CCUCCGGc-----AGGAGGAG- -5'
5413 5' -63 NC_001798.1 + 107899 0.68 0.477092
Target:  5'- aGCACCCCaccgaaaaacgGAGcGGGCCGaUCCgUCCUUg -3'
miRNA:   3'- -CGUGGGGg----------CUCcUCCGGC-AGG-AGGAG- -5'
5413 5' -63 NC_001798.1 + 65678 0.68 0.486099
Target:  5'- cGCACgCCCCGGuGGGGCgCGUgCUCUg- -3'
miRNA:   3'- -CGUG-GGGGCUcCUCCG-GCAgGAGGag -5'
5413 5' -63 NC_001798.1 + 134157 0.68 0.486099
Target:  5'- -gGCCCCCGGGGccgucgcGGCCGcCCgcgCCg- -3'
miRNA:   3'- cgUGGGGGCUCCu------CCGGCaGGa--GGag -5'
5413 5' -63 NC_001798.1 + 62440 0.68 0.503429
Target:  5'- -aGCCCCCGgacgucgccgguGGGccGcgcgacggcgcccGGUCGUCCUCCUCg -3'
miRNA:   3'- cgUGGGGGC------------UCC--U-------------CCGGCAGGAGGAG- -5'
5413 5' -63 NC_001798.1 + 153861 0.68 0.504349
Target:  5'- cCGCCCUCGcucGGGGGGCUGUUCgcccaCUCu -3'
miRNA:   3'- cGUGGGGGC---UCCUCCGGCAGGag---GAG- -5'
5413 5' -63 NC_001798.1 + 75050 0.68 0.504349
Target:  5'- uCGCCgCCGAGGuccCCG-CCUCCUCc -3'
miRNA:   3'- cGUGGgGGCUCCuccGGCaGGAGGAG- -5'
5413 5' -63 NC_001798.1 + 58893 0.68 0.504349
Target:  5'- -aACCCCCgGAGGcGcGCCGgCCUCCcCg -3'
miRNA:   3'- cgUGGGGG-CUCCuC-CGGCaGGAGGaG- -5'
5413 5' -63 NC_001798.1 + 127616 0.68 0.508035
Target:  5'- cGCuGCCgCCCGAGcuGAGGCCGcugcuggugcuggucUCCcgCCUCu -3'
miRNA:   3'- -CG-UGG-GGGCUC--CUCCGGC---------------AGGa-GGAG- -5'
5413 5' -63 NC_001798.1 + 45861 0.68 0.512658
Target:  5'- gGC-CCCCCGcuugcuuGGGGGGgCGUCCgCgUCa -3'
miRNA:   3'- -CGuGGGGGC-------UCCUCCgGCAGGaGgAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.