Results 1 - 20 of 80 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5413 | 5' | -63 | NC_001798.1 | + | 135785 | 0.66 | 0.638096 |
Target: 5'- -gGCCCgCCgGAGGAGGCCGUgugcgcggcCCggggCgUCa -3' miRNA: 3'- cgUGGG-GG-CUCCUCCGGCA---------GGa---GgAG- -5' |
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5413 | 5' | -63 | NC_001798.1 | + | 16219 | 0.66 | 0.638096 |
Target: 5'- cGCGCCgCCUGuGGgggggcggugGGGCCGgggcCCUCCcCg -3' miRNA: 3'- -CGUGG-GGGCuCC----------UCCGGCa---GGAGGaG- -5' |
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5413 | 5' | -63 | NC_001798.1 | + | 77694 | 0.66 | 0.635177 |
Target: 5'- aGCGCgCCCGGGGcagcagcgagcgcuGGGCCG-CCggCgUCg -3' miRNA: 3'- -CGUGgGGGCUCC--------------UCCGGCaGGa-GgAG- -5' |
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5413 | 5' | -63 | NC_001798.1 | + | 87987 | 0.66 | 0.634205 |
Target: 5'- cGCGCCuCCCG-GGGGGUCGgcaugcgacggcgUCUCC-Cg -3' miRNA: 3'- -CGUGG-GGGCuCCUCCGGCa------------GGAGGaG- -5' |
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5413 | 5' | -63 | NC_001798.1 | + | 92695 | 0.66 | 0.632259 |
Target: 5'- aGgGCUUCCG-GGAGGCCGUgugcaucagcaacacCUUCCUg -3' miRNA: 3'- -CgUGGGGGCuCCUCCGGCA---------------GGAGGAg -5' |
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5413 | 5' | -63 | NC_001798.1 | + | 86901 | 0.66 | 0.628367 |
Target: 5'- -aACCCCggCGuGGAGcGCCGggCCUCC-Cg -3' miRNA: 3'- cgUGGGG--GCuCCUC-CGGCa-GGAGGaG- -5' |
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5413 | 5' | -63 | NC_001798.1 | + | 86441 | 0.66 | 0.628367 |
Target: 5'- gGCGCagCCCGGGGAcgggGGCCGguucgugagCCUgCUUCg -3' miRNA: 3'- -CGUGg-GGGCUCCU----CCGGCa--------GGA-GGAG- -5' |
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5413 | 5' | -63 | NC_001798.1 | + | 124070 | 0.66 | 0.628367 |
Target: 5'- -gACCCCCcggGAGGAGGCgGcgCCUgCg- -3' miRNA: 3'- cgUGGGGG---CUCCUCCGgCa-GGAgGag -5' |
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5413 | 5' | -63 | NC_001798.1 | + | 147015 | 0.66 | 0.628367 |
Target: 5'- -gACCCCCGGGcGGGCCGgggcuuggCCgCCg- -3' miRNA: 3'- cgUGGGGGCUCcUCCGGCa-------GGaGGag -5' |
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5413 | 5' | -63 | NC_001798.1 | + | 84215 | 0.66 | 0.627395 |
Target: 5'- cGCGcCCCCCGGGGcgccgugGGGCCGguuaaaaaaCC-CCUg -3' miRNA: 3'- -CGU-GGGGGCUCC-------UCCGGCa--------GGaGGAg -5' |
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5413 | 5' | -63 | NC_001798.1 | + | 153258 | 0.66 | 0.618642 |
Target: 5'- cGCGCCgCCGccGccGCC-UCCUCCUCc -3' miRNA: 3'- -CGUGGgGGCucCucCGGcAGGAGGAG- -5' |
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5413 | 5' | -63 | NC_001798.1 | + | 23885 | 0.66 | 0.618642 |
Target: 5'- gGCGCCCgaggCgGAGGAGGCgCGggcCCgguucgaggCCUCg -3' miRNA: 3'- -CGUGGG----GgCUCCUCCG-GCa--GGa--------GGAG- -5' |
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5413 | 5' | -63 | NC_001798.1 | + | 1502 | 0.66 | 0.618642 |
Target: 5'- cCGCgCCCGAGGcggcggcccGGCCGUCCagcgCCg- -3' miRNA: 3'- cGUGgGGGCUCCu--------CCGGCAGGa---GGag -5' |
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5413 | 5' | -63 | NC_001798.1 | + | 110506 | 0.66 | 0.618642 |
Target: 5'- uCGCCCCCGGGuuucuGGCCG-CgUCCg- -3' miRNA: 3'- cGUGGGGGCUCcu---CCGGCaGgAGGag -5' |
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5413 | 5' | -63 | NC_001798.1 | + | 24703 | 0.66 | 0.618642 |
Target: 5'- cGCGCCCCCGcgcccGGGGcccgcgggcgcGGCCGcCCcgCCg- -3' miRNA: 3'- -CGUGGGGGC-----UCCU-----------CCGGCaGGa-GGag -5' |
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5413 | 5' | -63 | NC_001798.1 | + | 152509 | 0.66 | 0.599224 |
Target: 5'- cGCGCgCCCCGGcGGGGGCgGagggagggaaUCCcccCCUCu -3' miRNA: 3'- -CGUG-GGGGCU-CCUCCGgC----------AGGa--GGAG- -5' |
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5413 | 5' | -63 | NC_001798.1 | + | 53221 | 0.66 | 0.589546 |
Target: 5'- cCACCCCgGAGGGgcuccucagcgcGGCCGUgggCgUCCUg -3' miRNA: 3'- cGUGGGGgCUCCU------------CCGGCA---GgAGGAg -5' |
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5413 | 5' | -63 | NC_001798.1 | + | 23826 | 0.66 | 0.583751 |
Target: 5'- cCGCCCCCGGGGcgcgugcuguacggcGGGCUGggcgacagCCgccccggCCUCu -3' miRNA: 3'- cGUGGGGGCUCC---------------UCCGGCa-------GGa------GGAG- -5' |
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5413 | 5' | -63 | NC_001798.1 | + | 31582 | 0.66 | 0.579895 |
Target: 5'- cGCGCCCCCGc-GcGGCCGUCgCcCCg- -3' miRNA: 3'- -CGUGGGGGCucCuCCGGCAG-GaGGag -5' |
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5413 | 5' | -63 | NC_001798.1 | + | 138157 | 0.66 | 0.579895 |
Target: 5'- cGCGCCCCCGGguccuGGGGGCgCGaCCcgcggCCg- -3' miRNA: 3'- -CGUGGGGGCU-----CCUCCG-GCaGGa----GGag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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