miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5413 5' -63 NC_001798.1 + 31 0.67 0.5607
Target:  5'- -aACCCCCGGGGGGGgUGUUUUUUg- -3'
miRNA:   3'- cgUGGGGGCUCCUCCgGCAGGAGGag -5'
5413 5' -63 NC_001798.1 + 143 0.67 0.570278
Target:  5'- cGCuCCCCCGcGGGcGCCG-CC-CCUCc -3'
miRNA:   3'- -CGuGGGGGCuCCUcCGGCaGGaGGAG- -5'
5413 5' -63 NC_001798.1 + 1502 0.66 0.618642
Target:  5'- cCGCgCCCGAGGcggcggcccGGCCGUCCagcgCCg- -3'
miRNA:   3'- cGUGgGGGCUCCu--------CCGGCAGGa---GGag -5'
5413 5' -63 NC_001798.1 + 3785 0.71 0.324484
Target:  5'- gGCGCCggggcgCCCGAGGccucgaaccGGGCCcgcgCCUCCUCc -3'
miRNA:   3'- -CGUGG------GGGCUCC---------UCCGGca--GGAGGAG- -5'
5413 5' -63 NC_001798.1 + 3885 0.7 0.368547
Target:  5'- cGCGCCCCgGgggcGGGGGGCCGgCC-CCg- -3'
miRNA:   3'- -CGUGGGGgC----UCCUCCGGCaGGaGGag -5'
5413 5' -63 NC_001798.1 + 4139 0.74 0.210786
Target:  5'- cCGCCCCCGGGGcccucgcGGGCacccccgCCUCCUCg -3'
miRNA:   3'- cGUGGGGGCUCC-------UCCGgca----GGAGGAG- -5'
5413 5' -63 NC_001798.1 + 4628 0.67 0.570278
Target:  5'- cGCGCUCCgGGGGGGGCgacgggauCGUgCgaacggCCUCg -3'
miRNA:   3'- -CGUGGGGgCUCCUCCG--------GCAgGa-----GGAG- -5'
5413 5' -63 NC_001798.1 + 4737 0.66 0.579895
Target:  5'- gGCcUCCCCGGacgccGGGGCCG-CCUCgUCg -3'
miRNA:   3'- -CGuGGGGGCUc----CUCCGGCaGGAGgAG- -5'
5413 5' -63 NC_001798.1 + 15118 0.67 0.536021
Target:  5'- gGCGCugucgucguCCUCGGGGGGuucGCCGUCCccggcgcccucaaacUCCUCg -3'
miRNA:   3'- -CGUG---------GGGGCUCCUC---CGGCAGG---------------AGGAG- -5'
5413 5' -63 NC_001798.1 + 16175 0.7 0.411573
Target:  5'- gGCGgCCCgCGGGGAccggggggacgcacgGGCCGcCCUCCg- -3'
miRNA:   3'- -CGUgGGG-GCUCCU---------------CCGGCaGGAGGag -5'
5413 5' -63 NC_001798.1 + 16219 0.66 0.638096
Target:  5'- cGCGCCgCCUGuGGgggggcggugGGGCCGgggcCCUCCcCg -3'
miRNA:   3'- -CGUGG-GGGCuCC----------UCCGGCa---GGAGGaG- -5'
5413 5' -63 NC_001798.1 + 22964 0.7 0.375501
Target:  5'- gGCGgCCCCGgcguccgGGGAGGCCGUCgacgagCCUg -3'
miRNA:   3'- -CGUgGGGGC-------UCCUCCGGCAGga----GGAg -5'
5413 5' -63 NC_001798.1 + 23826 0.66 0.583751
Target:  5'- cCGCCCCCGGGGcgcgugcuguacggcGGGCUGggcgacagCCgccccggCCUCu -3'
miRNA:   3'- cGUGGGGGCUCC---------------UCCGGCa-------GGa------GGAG- -5'
5413 5' -63 NC_001798.1 + 23885 0.66 0.618642
Target:  5'- gGCGCCCgaggCgGAGGAGGCgCGggcCCgguucgaggCCUCg -3'
miRNA:   3'- -CGUGGG----GgCUCCUCCG-GCa--GGa--------GGAG- -5'
5413 5' -63 NC_001798.1 + 24703 0.66 0.618642
Target:  5'- cGCGCCCCCGcgcccGGGGcccgcgggcgcGGCCGcCCcgCCg- -3'
miRNA:   3'- -CGUGGGGGC-----UCCU-----------CCGGCaGGa-GGag -5'
5413 5' -63 NC_001798.1 + 26180 0.69 0.433369
Target:  5'- cGUGCUCCCGGcgcuGGAcGGCCGggCCgccgCCUCg -3'
miRNA:   3'- -CGUGGGGGCU----CCU-CCGGCa-GGa---GGAG- -5'
5413 5' -63 NC_001798.1 + 27565 0.7 0.400121
Target:  5'- gGCGCCCgCGGGGGagcGGCCGg-CUCCg- -3'
miRNA:   3'- -CGUGGGgGCUCCU---CCGGCagGAGGag -5'
5413 5' -63 NC_001798.1 + 31474 0.71 0.353414
Target:  5'- cGCGCcgCCCCGcGGGccccGGGCCGcucuccuuugucUCCUCCUCc -3'
miRNA:   3'- -CGUG--GGGGC-UCC----UCCGGC------------AGGAGGAG- -5'
5413 5' -63 NC_001798.1 + 31582 0.66 0.579895
Target:  5'- cGCGCCCCCGc-GcGGCCGUCgCcCCg- -3'
miRNA:   3'- -CGUGGGGGCucCuCCGGCAG-GaGGag -5'
5413 5' -63 NC_001798.1 + 32074 0.76 0.175185
Target:  5'- cGCGCCCCCGucGGcgucuccgucgucccAGGCCGcggucgccgccgccUCCUCCUCc -3'
miRNA:   3'- -CGUGGGGGCu-CC---------------UCCGGC--------------AGGAGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.