miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5413 5' -63 NC_001798.1 + 39539 0.68 0.468169
Target:  5'- cGCGCCUcgCCGuGGguggcgccgGGGCCGUCCgUCCg- -3'
miRNA:   3'- -CGUGGG--GGCuCC---------UCCGGCAGG-AGGag -5'
5413 5' -63 NC_001798.1 + 40816 0.7 0.368547
Target:  5'- aGCGCCCCCu-GGGGGCCG-CUgguUCCg- -3'
miRNA:   3'- -CGUGGGGGcuCCUCCGGCaGG---AGGag -5'
5413 5' -63 NC_001798.1 + 45861 0.68 0.512658
Target:  5'- gGC-CCCCCGcuugcuuGGGGGGgCGUCCgCgUCa -3'
miRNA:   3'- -CGuGGGGGC-------UCCUCCgGCAGGaGgAG- -5'
5413 5' -63 NC_001798.1 + 52158 0.67 0.528502
Target:  5'- cGUGCUCCCGcGGGAGGCCGcguuugcggggcgCgUCCUg -3'
miRNA:   3'- -CGUGGGGGC-UCCUCCGGCa------------GgAGGAg -5'
5413 5' -63 NC_001798.1 + 52632 0.68 0.468169
Target:  5'- -gGCCCCCGAGGuGGGCaCGUacacCCcCCUg -3'
miRNA:   3'- cgUGGGGGCUCC-UCCG-GCA----GGaGGAg -5'
5413 5' -63 NC_001798.1 + 53221 0.66 0.589546
Target:  5'- cCACCCCgGAGGGgcuccucagcgcGGCCGUgggCgUCCUg -3'
miRNA:   3'- cGUGGGGgCUCCU------------CCGGCA---GgAGGAg -5'
5413 5' -63 NC_001798.1 + 53610 0.67 0.551167
Target:  5'- cGCGCCCCguucaaGAGcGGGGCCG-CCgcggCCa- -3'
miRNA:   3'- -CGUGGGGg-----CUC-CUCCGGCaGGa---GGag -5'
5413 5' -63 NC_001798.1 + 57240 0.77 0.130838
Target:  5'- -gGCCCCCGGGcGGGGCCGacacguuuaccaucaCCUCCUCu -3'
miRNA:   3'- cgUGGGGGCUC-CUCCGGCa--------------GGAGGAG- -5'
5413 5' -63 NC_001798.1 + 58893 0.68 0.504349
Target:  5'- -aACCCCCgGAGGcGcGCCGgCCUCCcCg -3'
miRNA:   3'- cgUGGGGG-CUCCuC-CGGCaGGAGGaG- -5'
5413 5' -63 NC_001798.1 + 62440 0.68 0.503429
Target:  5'- -aGCCCCCGgacgucgccgguGGGccGcgcgacggcgcccGGUCGUCCUCCUCg -3'
miRNA:   3'- cgUGGGGGC------------UCC--U-------------CCGGCAGGAGGAG- -5'
5413 5' -63 NC_001798.1 + 63952 0.7 0.38333
Target:  5'- uCGCCCUCGGagagcuuGGAGa-CGUCCUCCUCg -3'
miRNA:   3'- cGUGGGGGCU-------CCUCcgGCAGGAGGAG- -5'
5413 5' -63 NC_001798.1 + 65678 0.68 0.486099
Target:  5'- cGCACgCCCCGGuGGGGCgCGUgCUCUg- -3'
miRNA:   3'- -CGUG-GGGGCUcCUCCG-GCAgGAGGag -5'
5413 5' -63 NC_001798.1 + 66876 0.67 0.554975
Target:  5'- gGCGCCggggcuugggaaaggCCaCGGGGgcgGGGCCGUCgCUCCa- -3'
miRNA:   3'- -CGUGG---------------GG-GCUCC---UCCGGCAG-GAGGag -5'
5413 5' -63 NC_001798.1 + 67045 0.66 0.579895
Target:  5'- cGUAUCCucguCCGAGGAGuCCGagUCCUCCg- -3'
miRNA:   3'- -CGUGGG----GGCUCCUCcGGC--AGGAGGag -5'
5413 5' -63 NC_001798.1 + 70470 0.67 0.522888
Target:  5'- -gACCCCCGAGGcGGCCuUCCg---- -3'
miRNA:   3'- cgUGGGGGCUCCuCCGGcAGGaggag -5'
5413 5' -63 NC_001798.1 + 71108 0.68 0.470837
Target:  5'- cGCGCCCCCGGGGacgcugauggcgcGcgugcggacggacgcGGCCGUCUUCg-- -3'
miRNA:   3'- -CGUGGGGGCUCC-------------U---------------CCGGCAGGAGgag -5'
5413 5' -63 NC_001798.1 + 73011 0.67 0.570278
Target:  5'- cGCGCCCCCcAGcccGGCCGcagaCCUCgUCg -3'
miRNA:   3'- -CGUGGGGGcUCcu-CCGGCa---GGAGgAG- -5'
5413 5' -63 NC_001798.1 + 75050 0.68 0.504349
Target:  5'- uCGCCgCCGAGGuccCCG-CCUCCUCc -3'
miRNA:   3'- cGUGGgGGCUCCuccGGCaGGAGGAG- -5'
5413 5' -63 NC_001798.1 + 76361 0.69 0.424906
Target:  5'- -uGCCCCCGAGGAccuGGCgG-CCUggcUCUCg -3'
miRNA:   3'- cgUGGGGGCUCCU---CCGgCaGGA---GGAG- -5'
5413 5' -63 NC_001798.1 + 77091 0.67 0.541684
Target:  5'- aCGCCCCCGAGac-GCCGgUCCUCgUg -3'
miRNA:   3'- cGUGGGGGCUCcucCGGC-AGGAGgAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.