miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5413 5' -63 NC_001798.1 + 154481 0.67 0.570278
Target:  5'- cGCuCCCCCGcGGGcGCCG-CC-CCUCc -3'
miRNA:   3'- -CGuGGGGGCuCCUcCGGCaGGaGGAG- -5'
5413 5' -63 NC_001798.1 + 154369 0.67 0.5607
Target:  5'- -aACCCCCGGGGGGGgUGUUUUUUg- -3'
miRNA:   3'- cgUGGGGGCUCCUCCgGCAGGAGGag -5'
5413 5' -63 NC_001798.1 + 153861 0.68 0.504349
Target:  5'- cCGCCCUCGcucGGGGGGCUGUUCgcccaCUCu -3'
miRNA:   3'- cGUGGGGGC---UCCUCCGGCAGGag---GAG- -5'
5413 5' -63 NC_001798.1 + 153258 0.66 0.618642
Target:  5'- cGCGCCgCCGccGccGCC-UCCUCCUCc -3'
miRNA:   3'- -CGUGGgGGCucCucCGGcAGGAGGAG- -5'
5413 5' -63 NC_001798.1 + 152509 0.66 0.599224
Target:  5'- cGCGCgCCCCGGcGGGGGCgGagggagggaaUCCcccCCUCu -3'
miRNA:   3'- -CGUG-GGGGCU-CCUCCGgC----------AGGa--GGAG- -5'
5413 5' -63 NC_001798.1 + 150643 0.7 0.40828
Target:  5'- gGCugUCUCGcGGGGGgCGUCCUgcCCUCc -3'
miRNA:   3'- -CGugGGGGCuCCUCCgGCAGGA--GGAG- -5'
5413 5' -63 NC_001798.1 + 150158 0.7 0.384119
Target:  5'- cGCGCCUcuuCCGGGGgcGGGCCGccgCCcCCUCc -3'
miRNA:   3'- -CGUGGG---GGCUCC--UCCGGCa--GGaGGAG- -5'
5413 5' -63 NC_001798.1 + 147066 0.67 0.541684
Target:  5'- -gGCCCCCGcaccucGGcGGCCGcCC-CCUCc -3'
miRNA:   3'- cgUGGGGGCu-----CCuCCGGCaGGaGGAG- -5'
5413 5' -63 NC_001798.1 + 147015 0.66 0.628367
Target:  5'- -gACCCCCGGGcGGGCCGgggcuuggCCgCCg- -3'
miRNA:   3'- cgUGGGGGCUCcUCCGGCa-------GGaGGag -5'
5413 5' -63 NC_001798.1 + 146983 0.7 0.360925
Target:  5'- cGCGCCUCCGAGGGuccGCC-UCUUgCCUCg -3'
miRNA:   3'- -CGUGGGGGCUCCUc--CGGcAGGA-GGAG- -5'
5413 5' -63 NC_001798.1 + 138157 0.66 0.579895
Target:  5'- cGCGCCCCCGGguccuGGGGGCgCGaCCcgcggCCg- -3'
miRNA:   3'- -CGUGGGGGCU-----CCUCCG-GCaGGa----GGag -5'
5413 5' -63 NC_001798.1 + 135785 0.66 0.638096
Target:  5'- -gGCCCgCCgGAGGAGGCCGUgugcgcggcCCggggCgUCa -3'
miRNA:   3'- cgUGGG-GG-CUCCUCCGGCA---------GGa---GgAG- -5'
5413 5' -63 NC_001798.1 + 135047 0.72 0.284463
Target:  5'- -gGCCUCgGAGGcGGCCGgccgCCUCCUg -3'
miRNA:   3'- cgUGGGGgCUCCuCCGGCa---GGAGGAg -5'
5413 5' -63 NC_001798.1 + 134157 0.68 0.486099
Target:  5'- -gGCCCCCGGGGccgucgcGGCCGcCCgcgCCg- -3'
miRNA:   3'- cgUGGGGGCUCCu------CCGGCaGGa--GGag -5'
5413 5' -63 NC_001798.1 + 127616 0.68 0.508035
Target:  5'- cGCuGCCgCCCGAGcuGAGGCCGcugcuggugcuggucUCCcgCCUCu -3'
miRNA:   3'- -CG-UGG-GGGCUC--CUCCGGC---------------AGGa-GGAG- -5'
5413 5' -63 NC_001798.1 + 124424 0.69 0.441929
Target:  5'- aGCugCCCCGcGGucgcgcGGGCCGUggCCagagCCUCa -3'
miRNA:   3'- -CGugGGGGCuCC------UCCGGCA--GGa---GGAG- -5'
5413 5' -63 NC_001798.1 + 124136 0.75 0.201578
Target:  5'- cGCGCCCCCGccguggcGGAGGCCuGUCCcugCgUCg -3'
miRNA:   3'- -CGUGGGGGCu------CCUCCGG-CAGGa--GgAG- -5'
5413 5' -63 NC_001798.1 + 124070 0.66 0.628367
Target:  5'- -gACCCCCcggGAGGAGGCgGcgCCUgCg- -3'
miRNA:   3'- cgUGGGGG---CUCCUCCGgCa-GGAgGag -5'
5413 5' -63 NC_001798.1 + 123456 0.73 0.242822
Target:  5'- cGCGCCCCCGAcccGGGGcccgaaGCCGaCCUCgUCg -3'
miRNA:   3'- -CGUGGGGGCU---CCUC------CGGCaGGAGgAG- -5'
5413 5' -63 NC_001798.1 + 122384 0.69 0.424906
Target:  5'- cGC-CCCCCGc---GGCUGUCCUCCg- -3'
miRNA:   3'- -CGuGGGGGCuccuCCGGCAGGAGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.