miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5413 5' -63 NC_001798.1 + 122138 0.67 0.545471
Target:  5'- -gGCCCCCGGGccgcgggcGAGGaCGUCCUcaacgacgugcucacCCUCg -3'
miRNA:   3'- cgUGGGGGCUC--------CUCCgGCAGGA---------------GGAG- -5'
5413 5' -63 NC_001798.1 + 117024 0.68 0.477092
Target:  5'- gGUcCCCCCGGcccuGGGGGCCaacuacUUCUCCUCc -3'
miRNA:   3'- -CGuGGGGGCU----CCUCCGGc-----AGGAGGAG- -5'
5413 5' -63 NC_001798.1 + 110506 0.66 0.618642
Target:  5'- uCGCCCCCGGGuuucuGGCCG-CgUCCg- -3'
miRNA:   3'- cGUGGGGGCUCcu---CCGGCaGgAGGag -5'
5413 5' -63 NC_001798.1 + 109704 0.7 0.400121
Target:  5'- cGCGCCCUCGgccgagcagcGGGAacgcgcccGCCGgggCCUCCUCa -3'
miRNA:   3'- -CGUGGGGGC----------UCCUc-------CGGCa--GGAGGAG- -5'
5413 5' -63 NC_001798.1 + 107899 0.68 0.477092
Target:  5'- aGCACCCCaccgaaaaacgGAGcGGGCCGaUCCgUCCUUg -3'
miRNA:   3'- -CGUGGGGg----------CUCcUCCGGC-AGG-AGGAG- -5'
5413 5' -63 NC_001798.1 + 104317 0.67 0.570278
Target:  5'- cGC-CCCCCGAGcGAuGGCC-UCCgCCg- -3'
miRNA:   3'- -CGuGGGGGCUC-CU-CCGGcAGGaGGag -5'
5413 5' -63 NC_001798.1 + 97032 0.67 0.570278
Target:  5'- uCugUCCgCGAGGAGGCCGacgcCCUgCUg -3'
miRNA:   3'- cGugGGG-GCUCCUCCGGCa---GGAgGAg -5'
5413 5' -63 NC_001798.1 + 92695 0.66 0.632259
Target:  5'- aGgGCUUCCG-GGAGGCCGUgugcaucagcaacacCUUCCUg -3'
miRNA:   3'- -CgUGGGGGCuCCUCCGGCA---------------GGAGGAg -5'
5413 5' -63 NC_001798.1 + 91117 0.72 0.297354
Target:  5'- cGCugCUCCGcGGGGG-CGUCCUCgUCc -3'
miRNA:   3'- -CGugGGGGCuCCUCCgGCAGGAGgAG- -5'
5413 5' -63 NC_001798.1 + 89413 0.73 0.270798
Target:  5'- --cCCCCCGAGGcacGGCCGggcgcuugggcgCCUCCUUg -3'
miRNA:   3'- cguGGGGGCUCCu--CCGGCa-----------GGAGGAG- -5'
5413 5' -63 NC_001798.1 + 88959 0.7 0.400121
Target:  5'- uGUugCUugUCGAGGAGGaCGgCCUCCUCg -3'
miRNA:   3'- -CGugGG--GGCUCCUCCgGCaGGAGGAG- -5'
5413 5' -63 NC_001798.1 + 87987 0.66 0.634205
Target:  5'- cGCGCCuCCCG-GGGGGUCGgcaugcgacggcgUCUCC-Cg -3'
miRNA:   3'- -CGUGG-GGGCuCCUCCGGCa------------GGAGGaG- -5'
5413 5' -63 NC_001798.1 + 86901 0.66 0.628367
Target:  5'- -aACCCCggCGuGGAGcGCCGggCCUCC-Cg -3'
miRNA:   3'- cgUGGGG--GCuCCUC-CGGCa-GGAGGaG- -5'
5413 5' -63 NC_001798.1 + 86441 0.66 0.628367
Target:  5'- gGCGCagCCCGGGGAcgggGGCCGguucgugagCCUgCUUCg -3'
miRNA:   3'- -CGUGg-GGGCUCCU----CCGGCa--------GGA-GGAG- -5'
5413 5' -63 NC_001798.1 + 84215 0.66 0.627395
Target:  5'- cGCGcCCCCCGGGGcgccgugGGGCCGguuaaaaaaCC-CCUg -3'
miRNA:   3'- -CGU-GGGGGCUCC-------UCCGGCa--------GGaGGAg -5'
5413 5' -63 NC_001798.1 + 81981 0.67 0.570278
Target:  5'- cCGCCCgCCGaAGGAgcGGUCGUCC-CCg- -3'
miRNA:   3'- cGUGGG-GGC-UCCU--CCGGCAGGaGGag -5'
5413 5' -63 NC_001798.1 + 81786 0.71 0.353414
Target:  5'- cGCccCCCCCGAGGGGuGgCGUCCgCCg- -3'
miRNA:   3'- -CGu-GGGGGCUCCUC-CgGCAGGaGGag -5'
5413 5' -63 NC_001798.1 + 81658 0.69 0.450584
Target:  5'- aGUcCCCCCGcGGAuGCCGcgCUUCCUCc -3'
miRNA:   3'- -CGuGGGGGCuCCUcCGGCa-GGAGGAG- -5'
5413 5' -63 NC_001798.1 + 80237 0.67 0.532257
Target:  5'- gGC-CCCCCGAcccGGGGCC-UCCUgUUCg -3'
miRNA:   3'- -CGuGGGGGCUc--CUCCGGcAGGAgGAG- -5'
5413 5' -63 NC_001798.1 + 77694 0.66 0.635177
Target:  5'- aGCGCgCCCGGGGcagcagcgagcgcuGGGCCG-CCggCgUCg -3'
miRNA:   3'- -CGUGgGGGCUCC--------------UCCGGCaGGa-GgAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.