Results 41 - 60 of 80 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5413 | 5' | -63 | NC_001798.1 | + | 89413 | 0.73 | 0.270798 |
Target: 5'- --cCCCCCGAGGcacGGCCGggcgcuugggcgCCUCCUUg -3' miRNA: 3'- cguGGGGGCUCCu--CCGGCa-----------GGAGGAG- -5' |
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5413 | 5' | -63 | NC_001798.1 | + | 123456 | 0.73 | 0.242822 |
Target: 5'- cGCGCCCCCGAcccGGGGcccgaaGCCGaCCUCgUCg -3' miRNA: 3'- -CGUGGGGGCU---CCUC------CGGCaGGAGgAG- -5' |
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5413 | 5' | -63 | NC_001798.1 | + | 4139 | 0.74 | 0.210786 |
Target: 5'- cCGCCCCCGGGGcccucgcGGGCacccccgCCUCCUCg -3' miRNA: 3'- cGUGGGGGCUCC-------UCCGgca----GGAGGAG- -5' |
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5413 | 5' | -63 | NC_001798.1 | + | 124136 | 0.75 | 0.201578 |
Target: 5'- cGCGCCCCCGccguggcGGAGGCCuGUCCcugCgUCg -3' miRNA: 3'- -CGUGGGGGCu------CCUCCGG-CAGGa--GgAG- -5' |
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5413 | 5' | -63 | NC_001798.1 | + | 32074 | 0.76 | 0.175185 |
Target: 5'- cGCGCCCCCGucGGcgucuccgucgucccAGGCCGcggucgccgccgccUCCUCCUCc -3' miRNA: 3'- -CGUGGGGGCu-CC---------------UCCGGC--------------AGGAGGAG- -5' |
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5413 | 5' | -63 | NC_001798.1 | + | 22964 | 0.7 | 0.375501 |
Target: 5'- gGCGgCCCCGgcguccgGGGAGGCCGUCgacgagCCUg -3' miRNA: 3'- -CGUgGGGGC-------UCCUCCGGCAGga----GGAg -5' |
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5413 | 5' | -63 | NC_001798.1 | + | 63952 | 0.7 | 0.38333 |
Target: 5'- uCGCCCUCGGagagcuuGGAGa-CGUCCUCCUCg -3' miRNA: 3'- cGUGGGGGCU-------CCUCcgGCAGGAGGAG- -5' |
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5413 | 5' | -63 | NC_001798.1 | + | 39539 | 0.68 | 0.468169 |
Target: 5'- cGCGCCUcgCCGuGGguggcgccgGGGCCGUCCgUCCg- -3' miRNA: 3'- -CGUGGG--GGCuCC---------UCCGGCAGG-AGGag -5' |
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5413 | 5' | -63 | NC_001798.1 | + | 52632 | 0.68 | 0.468169 |
Target: 5'- -gGCCCCCGAGGuGGGCaCGUacacCCcCCUg -3' miRNA: 3'- cgUGGGGGCUCC-UCCG-GCA----GGaGGAg -5' |
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5413 | 5' | -63 | NC_001798.1 | + | 81658 | 0.69 | 0.450584 |
Target: 5'- aGUcCCCCCGcGGAuGCCGcgCUUCCUCc -3' miRNA: 3'- -CGuGGGGGCuCCUcCGGCa-GGAGGAG- -5' |
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5413 | 5' | -63 | NC_001798.1 | + | 124424 | 0.69 | 0.441929 |
Target: 5'- aGCugCCCCGcGGucgcgcGGGCCGUggCCagagCCUCa -3' miRNA: 3'- -CGugGGGGCuCC------UCCGGCA--GGa---GGAG- -5' |
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5413 | 5' | -63 | NC_001798.1 | + | 26180 | 0.69 | 0.433369 |
Target: 5'- cGUGCUCCCGGcgcuGGAcGGCCGggCCgccgCCUCg -3' miRNA: 3'- -CGUGGGGGCU----CCU-CCGGCa-GGa---GGAG- -5' |
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5413 | 5' | -63 | NC_001798.1 | + | 122384 | 0.69 | 0.424906 |
Target: 5'- cGC-CCCCCGc---GGCUGUCCUCCg- -3' miRNA: 3'- -CGuGGGGGCuccuCCGGCAGGAGGag -5' |
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5413 | 5' | -63 | NC_001798.1 | + | 76361 | 0.69 | 0.424906 |
Target: 5'- -uGCCCCCGAGGAccuGGCgG-CCUggcUCUCg -3' miRNA: 3'- cgUGGGGGCUCCU---CCGgCaGGA---GGAG- -5' |
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5413 | 5' | -63 | NC_001798.1 | + | 16175 | 0.7 | 0.411573 |
Target: 5'- gGCGgCCCgCGGGGAccggggggacgcacgGGCCGcCCUCCg- -3' miRNA: 3'- -CGUgGGG-GCUCCU---------------CCGGCaGGAGGag -5' |
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5413 | 5' | -63 | NC_001798.1 | + | 150643 | 0.7 | 0.40828 |
Target: 5'- gGCugUCUCGcGGGGGgCGUCCUgcCCUCc -3' miRNA: 3'- -CGugGGGGCuCCUCCgGCAGGA--GGAG- -5' |
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5413 | 5' | -63 | NC_001798.1 | + | 109704 | 0.7 | 0.400121 |
Target: 5'- cGCGCCCUCGgccgagcagcGGGAacgcgcccGCCGgggCCUCCUCa -3' miRNA: 3'- -CGUGGGGGC----------UCCUc-------CGGCa--GGAGGAG- -5' |
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5413 | 5' | -63 | NC_001798.1 | + | 27565 | 0.7 | 0.400121 |
Target: 5'- gGCGCCCgCGGGGGagcGGCCGg-CUCCg- -3' miRNA: 3'- -CGUGGGgGCUCCU---CCGGCagGAGGag -5' |
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5413 | 5' | -63 | NC_001798.1 | + | 88959 | 0.7 | 0.400121 |
Target: 5'- uGUugCUugUCGAGGAGGaCGgCCUCCUCg -3' miRNA: 3'- -CGugGG--GGCUCCUCCgGCaGGAGGAG- -5' |
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5413 | 5' | -63 | NC_001798.1 | + | 150158 | 0.7 | 0.384119 |
Target: 5'- cGCGCCUcuuCCGGGGgcGGGCCGccgCCcCCUCc -3' miRNA: 3'- -CGUGGG---GGCUCC--UCCGGCa--GGaGGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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