Results 1 - 20 of 37 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5414 | 3' | -58.9 | NC_001798.1 | + | 150 | 0.69 | 0.636775 |
Target: 5'- ----cCGCGgGCGCcGccCCUCCCCCc -3' miRNA: 3'- guagaGCGCgCGCGaCaaGGAGGGGG- -5' |
|||||||
5414 | 3' | -58.9 | NC_001798.1 | + | 438 | 0.67 | 0.745583 |
Target: 5'- ----cCGCGCGCcacgggGCUGcggucccgcggccgCCUCCCCCg -3' miRNA: 3'- guagaGCGCGCG------CGACaa------------GGAGGGGG- -5' |
|||||||
5414 | 3' | -58.9 | NC_001798.1 | + | 2652 | 0.68 | 0.676602 |
Target: 5'- -cUCUUGCGCuuGCGCg---CCUCCCgCg -3' miRNA: 3'- guAGAGCGCG--CGCGacaaGGAGGGgG- -5' |
|||||||
5414 | 3' | -58.9 | NC_001798.1 | + | 5495 | 0.66 | 0.79941 |
Target: 5'- --cCUCGuCGCGgGCggGcUCgCUCCCCUg -3' miRNA: 3'- guaGAGC-GCGCgCGa-CaAG-GAGGGGG- -5' |
|||||||
5414 | 3' | -58.9 | NC_001798.1 | + | 7622 | 0.66 | 0.816604 |
Target: 5'- --aCUCGCGgcacCGCGC-GgaCCggCCCCCg -3' miRNA: 3'- guaGAGCGC----GCGCGaCaaGGa-GGGGG- -5' |
|||||||
5414 | 3' | -58.9 | NC_001798.1 | + | 11627 | 0.69 | 0.626791 |
Target: 5'- gCcgCUCGCGgGCGCgGgcgUCCcugugUCCCCg -3' miRNA: 3'- -GuaGAGCGCgCGCGaCa--AGGa----GGGGG- -5' |
|||||||
5414 | 3' | -58.9 | NC_001798.1 | + | 25424 | 0.73 | 0.401796 |
Target: 5'- --cCUCGCuggccGCGCGCUGcgCCgccccgCCCCCc -3' miRNA: 3'- guaGAGCG-----CGCGCGACaaGGa-----GGGGG- -5' |
|||||||
5414 | 3' | -58.9 | NC_001798.1 | + | 28387 | 0.67 | 0.75405 |
Target: 5'- ----aCGCGcCGCGCgggaagGUacgCCUCCCCUc -3' miRNA: 3'- guagaGCGC-GCGCGa-----CAa--GGAGGGGG- -5' |
|||||||
5414 | 3' | -58.9 | NC_001798.1 | + | 29300 | 0.67 | 0.760578 |
Target: 5'- --cCUCGCGCGCcgccggguggguggGCUGaUCggCCCCUa -3' miRNA: 3'- guaGAGCGCGCG--------------CGACaAGgaGGGGG- -5' |
|||||||
5414 | 3' | -58.9 | NC_001798.1 | + | 32261 | 0.68 | 0.673627 |
Target: 5'- gCGUC-CGCGUccgGCGCUGgggagagacgagaaaCCUCCCUCg -3' miRNA: 3'- -GUAGaGCGCG---CGCGACaa-------------GGAGGGGG- -5' |
|||||||
5414 | 3' | -58.9 | NC_001798.1 | + | 39480 | 0.66 | 0.790593 |
Target: 5'- --cCUgGCGCGUGCcucGUggCCgcgggCCCCCg -3' miRNA: 3'- guaGAgCGCGCGCGa--CAa-GGa----GGGGG- -5' |
|||||||
5414 | 3' | -58.9 | NC_001798.1 | + | 47840 | 0.73 | 0.436026 |
Target: 5'- ----cCGCGCGCGCUccUCCaCCCCCc -3' miRNA: 3'- guagaGCGCGCGCGAcaAGGaGGGGG- -5' |
|||||||
5414 | 3' | -58.9 | NC_001798.1 | + | 65586 | 0.69 | 0.656726 |
Target: 5'- gAUgUUGuCGCaGCGCUGggCCUCCUCg -3' miRNA: 3'- gUAgAGC-GCG-CGCGACaaGGAGGGGg -5' |
|||||||
5414 | 3' | -58.9 | NC_001798.1 | + | 72573 | 0.7 | 0.547628 |
Target: 5'- -----aGCGCGCGCUGgucgCgUCCCUCg -3' miRNA: 3'- guagagCGCGCGCGACaa--GgAGGGGG- -5' |
|||||||
5414 | 3' | -58.9 | NC_001798.1 | + | 75776 | 0.69 | 0.612821 |
Target: 5'- --gCUCGCGCGCccacccgaacaccCUGUUCg-CCCCCg -3' miRNA: 3'- guaGAGCGCGCGc------------GACAAGgaGGGGG- -5' |
|||||||
5414 | 3' | -58.9 | NC_001798.1 | + | 75950 | 0.68 | 0.676602 |
Target: 5'- gGUCUCGCaGCGCGCcGggCC-CCUgaCCg -3' miRNA: 3'- gUAGAGCG-CGCGCGaCaaGGaGGG--GG- -5' |
|||||||
5414 | 3' | -58.9 | NC_001798.1 | + | 76261 | 0.68 | 0.666677 |
Target: 5'- aCGUCgcucagCGCGcCGCGCUcc-CC-CCCCCg -3' miRNA: 3'- -GUAGa-----GCGC-GCGCGAcaaGGaGGGGG- -5' |
|||||||
5414 | 3' | -58.9 | NC_001798.1 | + | 79428 | 0.66 | 0.79941 |
Target: 5'- gAUCuUCGCGCccucgacgcccGCGCccgGgccucUUCUUCCCCCg -3' miRNA: 3'- gUAG-AGCGCG-----------CGCGa--C-----AAGGAGGGGG- -5' |
|||||||
5414 | 3' | -58.9 | NC_001798.1 | + | 81658 | 0.71 | 0.49972 |
Target: 5'- aGUCccccCGCGgaugcCGCGCU--UCCUCCCCCg -3' miRNA: 3'- gUAGa---GCGC-----GCGCGAcaAGGAGGGGG- -5' |
|||||||
5414 | 3' | -58.9 | NC_001798.1 | + | 81765 | 0.74 | 0.353775 |
Target: 5'- ---aUCGCGCGCGCcccGggCCUCCgCCCc -3' miRNA: 3'- guagAGCGCGCGCGa--CaaGGAGG-GGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home