miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5414 5' -44.8 NC_001798.1 + 70475 0.66 0.999999
Target:  5'- cCGAG-GCGGccuuccgGGAGAUGgacgUCAUCAAGg -3'
miRNA:   3'- aGCUCaCGCU-------UUUUUGCa---AGUGGUUC- -5'
5414 5' -44.8 NC_001798.1 + 57540 0.66 0.999999
Target:  5'- uUCGGGggGCGGAu--GCGUUcCGCgGGGa -3'
miRNA:   3'- -AGCUCa-CGCUUuuuUGCAA-GUGgUUC- -5'
5414 5' -44.8 NC_001798.1 + 63867 0.66 0.999998
Target:  5'- -aGAG-GCGGAGAGGCcgcccagguuuuccgUCACCAGGu -3'
miRNA:   3'- agCUCaCGCUUUUUUGca-------------AGUGGUUC- -5'
5414 5' -44.8 NC_001798.1 + 133598 0.66 0.999996
Target:  5'- cCGGG-GCGggGc-GCGUuaaaaaccUCACCAAGc -3'
miRNA:   3'- aGCUCaCGCuuUuuUGCA--------AGUGGUUC- -5'
5414 5' -44.8 NC_001798.1 + 72191 0.66 0.999995
Target:  5'- aUCGAGcagcugcUGCGcGAGcuguACGUgaUCGCCAGGg -3'
miRNA:   3'- -AGCUC-------ACGCuUUUu---UGCA--AGUGGUUC- -5'
5414 5' -44.8 NC_001798.1 + 33814 0.67 0.999994
Target:  5'- aUCGGG-GCGAGGGGgcucgcGCGUUCGCa--- -3'
miRNA:   3'- -AGCUCaCGCUUUUU------UGCAAGUGguuc -5'
5414 5' -44.8 NC_001798.1 + 50347 0.67 0.999994
Target:  5'- uUUGAGUuuGAAcAGAUGUUUACCGAu -3'
miRNA:   3'- -AGCUCAcgCUUuUUUGCAAGUGGUUc -5'
5414 5' -44.8 NC_001798.1 + 111840 0.67 0.999987
Target:  5'- gCGGG-GCGGGAAugcCGUcaaacaggccgcUCACCAGGg -3'
miRNA:   3'- aGCUCaCGCUUUUuu-GCA------------AGUGGUUC- -5'
5414 5' -44.8 NC_001798.1 + 109715 0.67 0.999987
Target:  5'- cCGAGcaGCGGGAAcGCGccCGCCGGGg -3'
miRNA:   3'- aGCUCa-CGCUUUUuUGCaaGUGGUUC- -5'
5414 5' -44.8 NC_001798.1 + 95378 0.67 0.999982
Target:  5'- -gGAGgGCGggGcgGCGgUCGCCAGc -3'
miRNA:   3'- agCUCaCGCuuUuuUGCaAGUGGUUc -5'
5414 5' -44.8 NC_001798.1 + 111950 0.69 0.999819
Target:  5'- gCGaAGcGCGAGGAAAUGUugacgaUCGCCGGGu -3'
miRNA:   3'- aGC-UCaCGCUUUUUUGCA------AGUGGUUC- -5'
5414 5' -44.8 NC_001798.1 + 10754 0.69 0.999767
Target:  5'- cCGGGUGCGuucc-GCGggCGCCGGa -3'
miRNA:   3'- aGCUCACGCuuuuuUGCaaGUGGUUc -5'
5414 5' -44.8 NC_001798.1 + 40571 0.7 0.999621
Target:  5'- gCGAcGUGCGAGGGuGCGUagGCCcGAGg -3'
miRNA:   3'- aGCU-CACGCUUUUuUGCAagUGG-UUC- -5'
5414 5' -44.8 NC_001798.1 + 59469 0.7 0.9994
Target:  5'- cCGGGcGCGguGAGGCGUUCgGCCAc- -3'
miRNA:   3'- aGCUCaCGCuuUUUUGCAAG-UGGUuc -5'
5414 5' -44.8 NC_001798.1 + 132028 0.75 0.984984
Target:  5'- cCGGG-GCGaAAAGAACGUUCACguGGu -3'
miRNA:   3'- aGCUCaCGC-UUUUUUGCAAGUGguUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.