miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5415 3' -55 NC_001798.1 + 64569 0.69 0.873436
Target:  5'- --gCCCGUCCAUCGcguccAGGAgCCGcuUCCc -3'
miRNA:   3'- ccaGGGCAGGUAGU-----UCCU-GGCcuAGG- -5'
5415 3' -55 NC_001798.1 + 46894 0.65 0.962964
Target:  5'- uGGUgCUGUCCGUU--GGACaaGGAUCg -3'
miRNA:   3'- -CCAgGGCAGGUAGuuCCUGg-CCUAGg -5'
5415 3' -55 NC_001798.1 + 56406 0.68 0.900426
Target:  5'- gGGUCCCG-CgG-CGGGGGCUGGuggcugCCg -3'
miRNA:   3'- -CCAGGGCaGgUaGUUCCUGGCCua----GG- -5'
5415 3' -55 NC_001798.1 + 59898 0.68 0.900426
Target:  5'- aGUCCUGggacgCCAagcucccggUCGAGGAacCCGGGcUCCg -3'
miRNA:   3'- cCAGGGCa----GGU---------AGUUCCU--GGCCU-AGG- -5'
5415 3' -55 NC_001798.1 + 42139 0.68 0.900426
Target:  5'- aGUCCCcGcCCAggcugUgGAGGACgCGGAUCUc -3'
miRNA:   3'- cCAGGG-CaGGU-----AgUUCCUG-GCCUAGG- -5'
5415 3' -55 NC_001798.1 + 42643 0.68 0.894009
Target:  5'- gGGUCgUGUCCAU-GGGGuCCGuGUCCu -3'
miRNA:   3'- -CCAGgGCAGGUAgUUCCuGGCcUAGG- -5'
5415 3' -55 NC_001798.1 + 68570 0.68 0.88737
Target:  5'- aGGcgCCCGaacagCCGcUCGAGGGCCGccUCCa -3'
miRNA:   3'- -CCa-GGGCa----GGU-AGUUCCUGGCcuAGG- -5'
5415 3' -55 NC_001798.1 + 12790 0.68 0.88737
Target:  5'- cGUCCCGgcgggaUCCucuaaGAGGGCCGaGUCCu -3'
miRNA:   3'- cCAGGGC------AGGuag--UUCCUGGCcUAGG- -5'
5415 3' -55 NC_001798.1 + 51126 0.68 0.885335
Target:  5'- --cCCCGcgCCGUCGccGGGAggcccgcggucaccCCGGGUCCc -3'
miRNA:   3'- ccaGGGCa-GGUAGU--UCCU--------------GGCCUAGG- -5'
5415 3' -55 NC_001798.1 + 137399 0.68 0.880511
Target:  5'- -cUCCCGggCGaCcGGGAUCGGGUCCg -3'
miRNA:   3'- ccAGGGCagGUaGuUCCUGGCCUAGG- -5'
5415 3' -55 NC_001798.1 + 27924 0.69 0.873436
Target:  5'- gGGUcCCCG-CCGcCGGGGucCCGGcgCCg -3'
miRNA:   3'- -CCA-GGGCaGGUaGUUCCu-GGCCuaGG- -5'
5415 3' -55 NC_001798.1 + 111760 0.79 0.351087
Target:  5'- cGGUCCCGgCCAUCGguugGGGGCgCGGGUgCCc -3'
miRNA:   3'- -CCAGGGCaGGUAGU----UCCUG-GCCUA-GG- -5'
5415 3' -55 NC_001798.1 + 90378 0.69 0.858663
Target:  5'- aGGUUCCGaacgCCGUCGGGGggcgcgguuggGCCGGcgcguUCCc -3'
miRNA:   3'- -CCAGGGCa---GGUAGUUCC-----------UGGCCu----AGG- -5'
5415 3' -55 NC_001798.1 + 25245 0.69 0.850975
Target:  5'- gGGcCCCGaCCcgCAGGGcgGCUGGcgCCg -3'
miRNA:   3'- -CCaGGGCaGGuaGUUCC--UGGCCuaGG- -5'
5415 3' -55 NC_001798.1 + 152556 0.69 0.843093
Target:  5'- cGGcCCCGUCCc-CGGGGAccaaCCGGGuguacUCCa -3'
miRNA:   3'- -CCaGGGCAGGuaGUUCCU----GGCCU-----AGG- -5'
5415 3' -55 NC_001798.1 + 110063 0.7 0.835025
Target:  5'- cGG-CCCGUCgCA-CAAcgcGGAgccCCGGAUCCu -3'
miRNA:   3'- -CCaGGGCAG-GUaGUU---CCU---GGCCUAGG- -5'
5415 3' -55 NC_001798.1 + 81384 0.72 0.696953
Target:  5'- cGGcgagCCCGUCCccccucgCAuguGGGCCuGGAUCCa -3'
miRNA:   3'- -CCa---GGGCAGGua-----GUu--CCUGG-CCUAGG- -5'
5415 3' -55 NC_001798.1 + 76037 0.72 0.696953
Target:  5'- gGGcCCCGaggCCAUCcaggcgcggcugGAGGACgugCGGAUCCa -3'
miRNA:   3'- -CCaGGGCa--GGUAG------------UUCCUG---GCCUAGG- -5'
5415 3' -55 NC_001798.1 + 97586 0.73 0.646822
Target:  5'- cGGcCCCGagCCAggggcgCAGGGGCCGGAgagCUg -3'
miRNA:   3'- -CCaGGGCa-GGUa-----GUUCCUGGCCUa--GG- -5'
5415 3' -55 NC_001798.1 + 106723 0.75 0.543651
Target:  5'- cGUCCCGUCCuagccAUCGccagGGGGCCuccggagcccgcggGGAUCCg -3'
miRNA:   3'- cCAGGGCAGG-----UAGU----UCCUGG--------------CCUAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.