miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5415 5' -60.5 NC_001798.1 + 22131 0.67 0.656051
Target:  5'- -cGGCCCcuuugGGGCCgGCGGGGgccaacGGGAg -3'
miRNA:   3'- caCCGGG-----UCUGGgCGCUCCauc---UCCU- -5'
5415 5' -60.5 NC_001798.1 + 11233 0.67 0.646114
Target:  5'- -gGGCCguCGGGCCacuGCGGGGccGAGGAc -3'
miRNA:   3'- caCCGG--GUCUGGg--CGCUCCauCUCCU- -5'
5415 5' -60.5 NC_001798.1 + 55979 0.67 0.636167
Target:  5'- -cGcGCCgGGGaggCCGCGGGGgcGAGGGg -3'
miRNA:   3'- caC-CGGgUCUg--GGCGCUCCauCUCCU- -5'
5415 5' -60.5 NC_001798.1 + 25517 0.67 0.636167
Target:  5'- -cGGCCUGGAUgCGCcAGGUgcccgacccGGAGGAc -3'
miRNA:   3'- caCCGGGUCUGgGCGcUCCA---------UCUCCU- -5'
5415 5' -60.5 NC_001798.1 + 27271 0.67 0.636167
Target:  5'- --aGCCCcguGGCgCGCGGGGgGGAGGGg -3'
miRNA:   3'- cacCGGGu--CUGgGCGCUCCaUCUCCU- -5'
5415 5' -60.5 NC_001798.1 + 81258 0.68 0.616272
Target:  5'- --cGCCCGcGACCCGCGGgaccuugcGGgGGGGGAu -3'
miRNA:   3'- cacCGGGU-CUGGGCGCU--------CCaUCUCCU- -5'
5415 5' -60.5 NC_001798.1 + 33367 0.68 0.616272
Target:  5'- cUGGCCggcCAGACCCuG-GGGGUGGuGGGc -3'
miRNA:   3'- cACCGG---GUCUGGG-CgCUCCAUCuCCU- -5'
5415 5' -60.5 NC_001798.1 + 27110 0.68 0.606338
Target:  5'- gGUGGCCCgAGccccCCCGC-AGGagcgGGAGGGa -3'
miRNA:   3'- -CACCGGG-UCu---GGGCGcUCCa---UCUCCU- -5'
5415 5' -60.5 NC_001798.1 + 32888 0.68 0.606338
Target:  5'- -cGGCCgAGGCgCCucgggggcaggGgGAGGUGGGGGGg -3'
miRNA:   3'- caCCGGgUCUG-GG-----------CgCUCCAUCUCCU- -5'
5415 5' -60.5 NC_001798.1 + 34010 0.68 0.596422
Target:  5'- --cGCCCGcGCCCaCGcGGUAGAGGAa -3'
miRNA:   3'- cacCGGGUcUGGGcGCuCCAUCUCCU- -5'
5415 5' -60.5 NC_001798.1 + 74845 0.68 0.596422
Target:  5'- --aGCCgAGACCUGCGgguccuggAGGUGGGGGc -3'
miRNA:   3'- cacCGGgUCUGGGCGC--------UCCAUCUCCu -5'
5415 5' -60.5 NC_001798.1 + 130530 0.68 0.596422
Target:  5'- gGUGGCggcgauGGCCC-CGAGGUGGGGGc -3'
miRNA:   3'- -CACCGggu---CUGGGcGCUCCAUCUCCu -5'
5415 5' -60.5 NC_001798.1 + 80388 0.69 0.547337
Target:  5'- -cGGCCCAGGCCCugGCGGcGGU-GAGc- -3'
miRNA:   3'- caCCGGGUCUGGG--CGCU-CCAuCUCcu -5'
5415 5' -60.5 NC_001798.1 + 24027 0.69 0.537661
Target:  5'- gGUGGCuCCAGaACCCGCGcguGGcgcccGGGGAc -3'
miRNA:   3'- -CACCG-GGUC-UGGGCGCu--CCau---CUCCU- -5'
5415 5' -60.5 NC_001798.1 + 117072 0.69 0.528045
Target:  5'- cGUGGUgCAGcacGCCCGCGAgagcgcGGcGGGGGAg -3'
miRNA:   3'- -CACCGgGUC---UGGGCGCU------CCaUCUCCU- -5'
5415 5' -60.5 NC_001798.1 + 2551 0.69 0.528045
Target:  5'- -cGGCCCccgcgggagGGGCggCCGCGGGGcGGGGGGc -3'
miRNA:   3'- caCCGGG---------UCUG--GGCGCUCCaUCUCCU- -5'
5415 5' -60.5 NC_001798.1 + 15439 0.69 0.518493
Target:  5'- -gGGcCCCGGAgUCGUGGGGcGGGGGGu -3'
miRNA:   3'- caCC-GGGUCUgGGCGCUCCaUCUCCU- -5'
5415 5' -60.5 NC_001798.1 + 147491 0.69 0.50901
Target:  5'- -gGGaCCCAGGCuCCGgGGGG-GGGGGGc -3'
miRNA:   3'- caCC-GGGUCUG-GGCgCUCCaUCUCCU- -5'
5415 5' -60.5 NC_001798.1 + 95563 0.69 0.50901
Target:  5'- -cGGCCCuggagguGGCCCaCGAGGcGGAGGc -3'
miRNA:   3'- caCCGGGu------CUGGGcGCUCCaUCUCCu -5'
5415 5' -60.5 NC_001798.1 + 76887 0.69 0.50901
Target:  5'- -gGGCCUcccuGCCCGCGGGGUGGAc-- -3'
miRNA:   3'- caCCGGGuc--UGGGCGCUCCAUCUccu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.