miRNA display CGI


Results 1 - 20 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5418 3' -65.7 NC_001798.1 + 134156 0.66 0.539638
Target:  5'- cGGC-CCCC--GGGGC-CG-UCGCGGCc -3'
miRNA:   3'- -CCGcGGGGccCCCCGcGCuAGUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 12599 0.66 0.539638
Target:  5'- aGGCGCUUgGGGGccaucugaGCGCG---GCGGCg -3'
miRNA:   3'- -CCGCGGGgCCCCc-------CGCGCuagUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 29897 0.66 0.539638
Target:  5'- --gGCUgCGGGuuGGGgGUGGUCGCGGg -3'
miRNA:   3'- ccgCGGgGCCC--CCCgCGCUAGUGCCg -5'
5418 3' -65.7 NC_001798.1 + 51434 0.66 0.539638
Target:  5'- --gGCCCCGGGGcgcGGCcuuccGCGAcggucgagauucUCGCGGg -3'
miRNA:   3'- ccgCGGGGCCCC---CCG-----CGCU------------AGUGCCg -5'
5418 3' -65.7 NC_001798.1 + 1826 0.66 0.539638
Target:  5'- cGgGCCCguCGGcGGGCcaguccgcgGCGcgCACGGCg -3'
miRNA:   3'- cCgCGGG--GCCcCCCG---------CGCuaGUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 46108 0.66 0.539638
Target:  5'- aGGCGUgCCCGGaGGGccaGCGCGua---GGCa -3'
miRNA:   3'- -CCGCG-GGGCC-CCC---CGCGCuagugCCG- -5'
5418 3' -65.7 NC_001798.1 + 111754 0.66 0.539638
Target:  5'- cGGCcccgGUCCCGGccaucgguugGGGGCGCGGgugcccgugaUCACGa- -3'
miRNA:   3'- -CCG----CGGGGCC----------CCCCGCGCU----------AGUGCcg -5'
5418 3' -65.7 NC_001798.1 + 120394 0.66 0.539638
Target:  5'- gGGCGaugUCCGcGGGGGC-CGAUCccgugaGCGcGCg -3'
miRNA:   3'- -CCGCg--GGGC-CCCCCGcGCUAG------UGC-CG- -5'
5418 3' -65.7 NC_001798.1 + 73346 0.66 0.539638
Target:  5'- cGCG-CCCGGcGGGcCGCGAg-ACGGUc -3'
miRNA:   3'- cCGCgGGGCCcCCC-GCGCUagUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 103376 0.66 0.539638
Target:  5'- cGGC-CCCCGaGGGuCGuUGAcCACGGCg -3'
miRNA:   3'- -CCGcGGGGCcCCCcGC-GCUaGUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 104791 0.66 0.539638
Target:  5'- aGGCGggccagcagguCCCCGaacgcaacGGGaGCGCGAUCGCGa- -3'
miRNA:   3'- -CCGC-----------GGGGCc-------CCC-CGCGCUAGUGCcg -5'
5418 3' -65.7 NC_001798.1 + 30000 0.66 0.538718
Target:  5'- uGCGCCgccccccgacccuCUGGGGGG-GCGAgggaGGCa -3'
miRNA:   3'- cCGCGG-------------GGCCCCCCgCGCUagugCCG- -5'
5418 3' -65.7 NC_001798.1 + 56773 0.66 0.53413
Target:  5'- aGGUGCgCgGGGGgcccuggccgccgacGGcCGCGGaggUCACGGUg -3'
miRNA:   3'- -CCGCGgGgCCCC---------------CC-GCGCU---AGUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 24550 0.66 0.530469
Target:  5'- cGGCGCCggCGGuGGuGGCGgCGG-C-CGGCg -3'
miRNA:   3'- -CCGCGGg-GCC-CC-CCGC-GCUaGuGCCG- -5'
5418 3' -65.7 NC_001798.1 + 34825 0.66 0.530469
Target:  5'- cGCGCUCCGccGGGGGCcCGggC-CGGa -3'
miRNA:   3'- cCGCGGGGC--CCCCCGcGCuaGuGCCg -5'
5418 3' -65.7 NC_001798.1 + 139363 0.66 0.530469
Target:  5'- cGGCGUCCgGcGGGGaGgGC--UCGCGGg -3'
miRNA:   3'- -CCGCGGGgC-CCCC-CgCGcuAGUGCCg -5'
5418 3' -65.7 NC_001798.1 + 51129 0.66 0.530469
Target:  5'- cGCGCCgucgCCGGGaGGCccGCGGUCACcccgGGUc -3'
miRNA:   3'- cCGCGG----GGCCCcCCG--CGCUAGUG----CCG- -5'
5418 3' -65.7 NC_001798.1 + 104507 0.66 0.530469
Target:  5'- cGUGCCaaaaacgCGGcGGcGGCGCGGuugacgucgUCGCGGUg -3'
miRNA:   3'- cCGCGGg------GCC-CC-CCGCGCU---------AGUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 39651 0.66 0.528642
Target:  5'- cGGCGCCgCCGGGGccguaucgaccccGGCcccggcgGCGAccUCGCcGCc -3'
miRNA:   3'- -CCGCGG-GGCCCC-------------CCG-------CGCU--AGUGcCG- -5'
5418 3' -65.7 NC_001798.1 + 1747 0.66 0.521358
Target:  5'- cGCGCCgCCGGccagcgcacGGCGCacugCACGGCg -3'
miRNA:   3'- cCGCGG-GGCCcc-------CCGCGcua-GUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.