Results 41 - 60 of 319 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5418 | 3' | -65.7 | NC_001798.1 | + | 111754 | 0.66 | 0.539638 |
Target: 5'- cGGCcccgGUCCCGGccaucgguugGGGGCGCGGgugcccgugaUCACGa- -3' miRNA: 3'- -CCG----CGGGGCC----------CCCCGCGCU----------AGUGCcg -5' |
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5418 | 3' | -65.7 | NC_001798.1 | + | 120394 | 0.66 | 0.539638 |
Target: 5'- gGGCGaugUCCGcGGGGGC-CGAUCccgugaGCGcGCg -3' miRNA: 3'- -CCGCg--GGGC-CCCCCGcGCUAG------UGC-CG- -5' |
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5418 | 3' | -65.7 | NC_001798.1 | + | 73346 | 0.66 | 0.539638 |
Target: 5'- cGCG-CCCGGcGGGcCGCGAg-ACGGUc -3' miRNA: 3'- cCGCgGGGCCcCCC-GCGCUagUGCCG- -5' |
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5418 | 3' | -65.7 | NC_001798.1 | + | 103376 | 0.66 | 0.539638 |
Target: 5'- cGGC-CCCCGaGGGuCGuUGAcCACGGCg -3' miRNA: 3'- -CCGcGGGGCcCCCcGC-GCUaGUGCCG- -5' |
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5418 | 3' | -65.7 | NC_001798.1 | + | 104791 | 0.66 | 0.539638 |
Target: 5'- aGGCGggccagcagguCCCCGaacgcaacGGGaGCGCGAUCGCGa- -3' miRNA: 3'- -CCGC-----------GGGGCc-------CCC-CGCGCUAGUGCcg -5' |
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5418 | 3' | -65.7 | NC_001798.1 | + | 51129 | 0.66 | 0.530469 |
Target: 5'- cGCGCCgucgCCGGGaGGCccGCGGUCACcccgGGUc -3' miRNA: 3'- cCGCGG----GGCCCcCCG--CGCUAGUG----CCG- -5' |
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5418 | 3' | -65.7 | NC_001798.1 | + | 139363 | 0.66 | 0.530469 |
Target: 5'- cGGCGUCCgGcGGGGaGgGC--UCGCGGg -3' miRNA: 3'- -CCGCGGGgC-CCCC-CgCGcuAGUGCCg -5' |
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5418 | 3' | -65.7 | NC_001798.1 | + | 149675 | 0.66 | 0.512308 |
Target: 5'- cGgGCCCCGGgcucGGGGCcGCccUCGCguGGCg -3' miRNA: 3'- cCgCGGGGCC----CCCCG-CGcuAGUG--CCG- -5' |
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5418 | 3' | -65.7 | NC_001798.1 | + | 150642 | 0.66 | 0.515016 |
Target: 5'- gGGCuGUCUcgCGGGGGGCGUccugcccuccgccgcCGCGGCg -3' miRNA: 3'- -CCG-CGGG--GCCCCCCGCGcua------------GUGCCG- -5' |
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5418 | 3' | -65.7 | NC_001798.1 | + | 34014 | 0.66 | 0.51592 |
Target: 5'- cGCGCCCacgcgguagaggaaGGGgacGGGCGCcacaccCACGGCu -3' miRNA: 3'- cCGCGGGg-------------CCC---CCCGCGcua---GUGCCG- -5' |
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5418 | 3' | -65.7 | NC_001798.1 | + | 24048 | 0.66 | 0.521358 |
Target: 5'- uGGCGCCCgGGGacguGGCGCugGAcCA-GGCc -3' miRNA: 3'- -CCGCGGGgCCCc---CCGCG--CUaGUgCCG- -5' |
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5418 | 3' | -65.7 | NC_001798.1 | + | 11642 | 0.66 | 0.521358 |
Target: 5'- gGGCGUCCCuguguccccGGGGGCGgGGgu-CGGg -3' miRNA: 3'- -CCGCGGGGc--------CCCCCGCgCUaguGCCg -5' |
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5418 | 3' | -65.7 | NC_001798.1 | + | 24816 | 0.66 | 0.521358 |
Target: 5'- uGCGCCUgcgCGGGGaccuGCGCGuggCcgGCGGCa -3' miRNA: 3'- cCGCGGG---GCCCCc---CGCGCua-G--UGCCG- -5' |
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5418 | 3' | -65.7 | NC_001798.1 | + | 27411 | 0.66 | 0.521358 |
Target: 5'- uGGCGUCuUCGGGGGG-GCGGggagcUugGGa -3' miRNA: 3'- -CCGCGG-GGCCCCCCgCGCUa----GugCCg -5' |
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5418 | 3' | -65.7 | NC_001798.1 | + | 103012 | 0.66 | 0.521358 |
Target: 5'- aGGUGCgCCCGGccaGCGCGAgcuCGGCc -3' miRNA: 3'- -CCGCG-GGGCCcccCGCGCUaguGCCG- -5' |
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5418 | 3' | -65.7 | NC_001798.1 | + | 1747 | 0.66 | 0.521358 |
Target: 5'- cGCGCCgCCGGccagcgcacGGCGCacugCACGGCg -3' miRNA: 3'- cCGCGG-GGCCcc-------CCGCGcua-GUGCCG- -5' |
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5418 | 3' | -65.7 | NC_001798.1 | + | 52158 | 0.66 | 0.521358 |
Target: 5'- cGUGCuCCCGcGGGaGGcCGCGuuugCGgGGCg -3' miRNA: 3'- cCGCG-GGGC-CCC-CC-GCGCua--GUgCCG- -5' |
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5418 | 3' | -65.7 | NC_001798.1 | + | 39651 | 0.66 | 0.528642 |
Target: 5'- cGGCGCCgCCGGGGccguaucgaccccGGCcccggcgGCGAccUCGCcGCc -3' miRNA: 3'- -CCGCGG-GGCCCC-------------CCG-------CGCU--AGUGcCG- -5' |
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5418 | 3' | -65.7 | NC_001798.1 | + | 24550 | 0.66 | 0.530469 |
Target: 5'- cGGCGCCggCGGuGGuGGCGgCGG-C-CGGCg -3' miRNA: 3'- -CCGCGGg-GCC-CC-CCGC-GCUaGuGCCG- -5' |
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5418 | 3' | -65.7 | NC_001798.1 | + | 34825 | 0.66 | 0.530469 |
Target: 5'- cGCGCUCCGccGGGGGCcCGggC-CGGa -3' miRNA: 3'- cCGCGGGGC--CCCCCGcGCuaGuGCCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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