miRNA display CGI


Results 101 - 120 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5418 3' -65.7 NC_001798.1 + 52877 0.68 0.417802
Target:  5'- uGGgGCCgCGGGuccGCGCGuggacAUCAUGGCg -3'
miRNA:   3'- -CCgCGGgGCCCcc-CGCGC-----UAGUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 34071 0.68 0.417802
Target:  5'- cGCGCCUUugggguuguugGGGGGGgGUGA-C-CGGCg -3'
miRNA:   3'- cCGCGGGG-----------CCCCCCgCGCUaGuGCCG- -5'
5418 3' -65.7 NC_001798.1 + 1139 0.68 0.417802
Target:  5'- cGCGCCUCGGc-GGCGUGGccagcccCGCGGCg -3'
miRNA:   3'- cCGCGGGGCCccCCGCGCUa------GUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 149272 0.68 0.416992
Target:  5'- cGCGCCCUGcucccgagaccacGGGuGGCGCGAcCGgaGGCc -3'
miRNA:   3'- cCGCGGGGC-------------CCC-CCGCGCUaGUg-CCG- -5'
5418 3' -65.7 NC_001798.1 + 154170 0.68 0.415374
Target:  5'- cGGCGUaggCCCGGagccggagcgcgucGGGGCGgGAgaguUCAcuCGGCa -3'
miRNA:   3'- -CCGCG---GGGCC--------------CCCCGCgCU----AGU--GCCG- -5'
5418 3' -65.7 NC_001798.1 + 95705 0.68 0.409741
Target:  5'- cGGCGUcgCCCGaaaGcGGGCGUu-UCACGGCg -3'
miRNA:   3'- -CCGCG--GGGCc--C-CCCGCGcuAGUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 137441 0.68 0.409741
Target:  5'- -cCGCCCCGcGGGGaCGCGcUCGCccggaaaucGGCg -3'
miRNA:   3'- ccGCGGGGCcCCCC-GCGCuAGUG---------CCG- -5'
5418 3' -65.7 NC_001798.1 + 24895 0.68 0.409741
Target:  5'- cGGgGCCCUGGGcccGGCGCugcCGCGGa -3'
miRNA:   3'- -CCgCGGGGCCCc--CCGCGcuaGUGCCg -5'
5418 3' -65.7 NC_001798.1 + 88044 0.68 0.417802
Target:  5'- gGGCaggGCCgCUGGGGGG-GCGggCucguccccugggGCGGCg -3'
miRNA:   3'- -CCG---CGG-GGCCCCCCgCGCuaG------------UGCCG- -5'
5418 3' -65.7 NC_001798.1 + 100846 0.68 0.421054
Target:  5'- gGGCGCUugCCGuGGGGCugcugguccuggccgGCcuGGUCGCGGCc -3'
miRNA:   3'- -CCGCGG--GGCcCCCCG---------------CG--CUAGUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 16219 0.68 0.42596
Target:  5'- cGCGCCgCCugugGGGGGGCGgUGGggcCGgGGCc -3'
miRNA:   3'- cCGCGG-GG----CCCCCCGC-GCUa--GUgCCG- -5'
5418 3' -65.7 NC_001798.1 + 67917 0.68 0.42596
Target:  5'- uGGCuuuuauCCCCGGcacacagggguGGGGUGCGAUCGUGuGCu -3'
miRNA:   3'- -CCGc-----GGGGCC-----------CCCCGCGCUAGUGC-CG- -5'
5418 3' -65.7 NC_001798.1 + 57553 0.68 0.42596
Target:  5'- uGCGUUCCGcGGGGaCGCGGagGgGGCg -3'
miRNA:   3'- cCGCGGGGCcCCCC-GCGCUagUgCCG- -5'
5418 3' -65.7 NC_001798.1 + 36478 0.68 0.42596
Target:  5'- aGCGCCgggaGGGGgcgccGGCGCGA-CGCGGg -3'
miRNA:   3'- cCGCGGgg--CCCC-----CCGCGCUaGUGCCg -5'
5418 3' -65.7 NC_001798.1 + 1514 0.68 0.42596
Target:  5'- cGGCGgCCCGGccguccagcgccGGGaGCaCGG-CGCGGCg -3'
miRNA:   3'- -CCGCgGGGCC------------CCC-CGcGCUaGUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 146104 0.68 0.42596
Target:  5'- gGGCGaaggaaGGGGGG-GUGGUgGCGGCg -3'
miRNA:   3'- -CCGCgggg--CCCCCCgCGCUAgUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 91295 0.68 0.42596
Target:  5'- uGGCuCCCCGGGGGuuGUGG--GgGGCa -3'
miRNA:   3'- -CCGcGGGGCCCCCcgCGCUagUgCCG- -5'
5418 3' -65.7 NC_001798.1 + 34990 0.68 0.42596
Target:  5'- gGGgGCCCCuccGGccGGGGCGCaccUCGgCGGCc -3'
miRNA:   3'- -CCgCGGGG---CC--CCCCGCGcu-AGU-GCCG- -5'
5418 3' -65.7 NC_001798.1 + 43663 0.68 0.42596
Target:  5'- cGUGCUggCCGcGGGGCuggggucguggGUGGUCACGGCc -3'
miRNA:   3'- cCGCGG--GGCcCCCCG-----------CGCUAGUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 7181 0.68 0.409741
Target:  5'- cGgGCCCCcgcaccGGGGcGGCGaccauGAUCcgGCGGCg -3'
miRNA:   3'- cCgCGGGG------CCCC-CCGCg----CUAG--UGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.