miRNA display CGI


Results 81 - 100 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5418 3' -65.7 NC_001798.1 + 36528 0.72 0.226133
Target:  5'- cGGCGgCCgGGcgGGGGCGCGcg-GCGGCc -3'
miRNA:   3'- -CCGCgGGgCC--CCCCGCGCuagUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 57165 0.72 0.21611
Target:  5'- uGGCGCCCgGGccGGCGCccuccgcccaGAUCACGuGCg -3'
miRNA:   3'- -CCGCGGGgCCccCCGCG----------CUAGUGC-CG- -5'
5418 3' -65.7 NC_001798.1 + 23884 0.72 0.21611
Target:  5'- gGGCGCCCgaggCGGaGGaGGCGCGggCcCGGUu -3'
miRNA:   3'- -CCGCGGG----GCC-CC-CCGCGCuaGuGCCG- -5'
5418 3' -65.7 NC_001798.1 + 20355 0.71 0.264342
Target:  5'- uGGCGCUgCCGGGcGGGUuCGGg-GCGGCa -3'
miRNA:   3'- -CCGCGG-GGCCC-CCCGcGCUagUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 32719 0.71 0.264342
Target:  5'- gGGCaCCCUGGuGGGCGCGcuggacuucCACGGCc -3'
miRNA:   3'- -CCGcGGGGCCcCCCGCGCua-------GUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 70311 0.71 0.276181
Target:  5'- gGGCGCggcggucggCCCGGcGGaGGCGCGggCGugcUGGCa -3'
miRNA:   3'- -CCGCG---------GGGCC-CC-CCGCGCuaGU---GCCG- -5'
5418 3' -65.7 NC_001798.1 + 149987 0.71 0.264342
Target:  5'- cGGCGCCCgCGGacgccGGGGCGa----GCGGCc -3'
miRNA:   3'- -CCGCGGG-GCC-----CCCCGCgcuagUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 87987 0.71 0.27021
Target:  5'- cGCGCcuCCCGGGGGGUcggcauGCGA---CGGCg -3'
miRNA:   3'- cCGCG--GGGCCCCCCG------CGCUaguGCCG- -5'
5418 3' -65.7 NC_001798.1 + 26188 0.71 0.252918
Target:  5'- cGGCGCUggacggCCGGGccgccgccucGGGCGCGGgcgacgcCAUGGCg -3'
miRNA:   3'- -CCGCGG------GGCCC----------CCCGCGCUa------GUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 111822 0.71 0.27021
Target:  5'- gGGCGUCCaGGGGcuGGCGCGGg-GCGGg -3'
miRNA:   3'- -CCGCGGGgCCCC--CCGCGCUagUGCCg -5'
5418 3' -65.7 NC_001798.1 + 2083 0.71 0.258008
Target:  5'- cGGCGgaccaCUCCGGGGggggcccgcccccGGCGCGGccCGCGGCc -3'
miRNA:   3'- -CCGC-----GGGGCCCC-------------CCGCGCUa-GUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 86150 0.71 0.27021
Target:  5'- aGCGCaCCgCGGGGcgcgcauGCGCGA-CGCGGCc -3'
miRNA:   3'- cCGCG-GG-GCCCCc------CGCGCUaGUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 154381 0.71 0.252918
Target:  5'- gGGUGUuuUuugggGGGGGGCGCGAagGCGGg -3'
miRNA:   3'- -CCGCGggG-----CCCCCCGCGCUagUGCCg -5'
5418 3' -65.7 NC_001798.1 + 15827 0.71 0.258008
Target:  5'- aGGCGCCgcccgguUCGGGGGGCcCGAacgUCGgGGUc -3'
miRNA:   3'- -CCGCGG-------GGCCCCCCGcGCU---AGUgCCG- -5'
5418 3' -65.7 NC_001798.1 + 154512 0.71 0.263761
Target:  5'- cGCGCCgCGGGgcugccuucccgcGGGCGCccccgCGCGGCu -3'
miRNA:   3'- cCGCGGgGCCC-------------CCCGCGcua--GUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 174 0.71 0.263761
Target:  5'- cGCGCCgCGGGgcugccuucccgcGGGCGCccccgCGCGGCu -3'
miRNA:   3'- cCGCGGgGCCC-------------CCCGCGcua--GUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 88990 0.71 0.25915
Target:  5'- gGGUGCUCUGGGGGaucCGCGAgcggaucugcuuucgCAUGGCc -3'
miRNA:   3'- -CCGCGGGGCCCCCc--GCGCUa--------------GUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 152511 0.71 0.275579
Target:  5'- cGCGCCCCGGcGGGG-GCGGagggagggaaUCccccccucucgggGCGGCc -3'
miRNA:   3'- cCGCGGGGCC-CCCCgCGCU----------AG-------------UGCCG- -5'
5418 3' -65.7 NC_001798.1 + 48371 0.71 0.264342
Target:  5'- gGGcCGCCCCGcGGGGCgugccgccGCGAccgCACGGg -3'
miRNA:   3'- -CC-GCGGGGCcCCCCG--------CGCUa--GUGCCg -5'
5418 3' -65.7 NC_001798.1 + 150071 0.71 0.276181
Target:  5'- uGGCccccaccCCCUGGGGGGCgagggGCGAgcgCGgGGCg -3'
miRNA:   3'- -CCGc------GGGGCCCCCCG-----CGCUa--GUgCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.