miRNA display CGI


Results 1 - 20 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5418 3' -65.7 NC_001798.1 + 15273 0.86 0.024939
Target:  5'- cGGUGCCCCGGGuuccGGGCGUGGcgguggUCGCGGCg -3'
miRNA:   3'- -CCGCGGGGCCC----CCCGCGCU------AGUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 150569 0.85 0.029045
Target:  5'- cGGgGCCCgCGGGGcGGCGCGGagACGGCg -3'
miRNA:   3'- -CCgCGGG-GCCCC-CCGCGCUagUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 31244 0.84 0.031341
Target:  5'- cGGCGCCCCGuugcgggcGGGGGUGgGAUCugGGUc -3'
miRNA:   3'- -CCGCGGGGC--------CCCCCGCgCUAGugCCG- -5'
5418 3' -65.7 NC_001798.1 + 138157 0.82 0.04694
Target:  5'- cGCGCCCCcggguccuGGGGGCGCGAccCGCGGCc -3'
miRNA:   3'- cCGCGGGGc-------CCCCCGCGCUa-GUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 101973 0.82 0.04694
Target:  5'- aGGagGCCCCGGGGGG-GCGAUgUGCGGCg -3'
miRNA:   3'- -CCg-CGGGGCCCCCCgCGCUA-GUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 2258 0.81 0.054565
Target:  5'- cGCGCCgCCGGGGGGCGgGGcggcgcagcgCGCGGCc -3'
miRNA:   3'- cCGCGG-GGCCCCCCGCgCUa---------GUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 2989 0.8 0.068299
Target:  5'- cGGCcgGCCCgCGGGccccGGGCGCGGgggCGCGGCg -3'
miRNA:   3'- -CCG--CGGG-GCCC----CCCGCGCUa--GUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 98622 0.8 0.070017
Target:  5'- cGCGCCUCGGGcGGCGUGGccgcgaccgUCGCGGCg -3'
miRNA:   3'- cCGCGGGGCCCcCCGCGCU---------AGUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 150838 0.8 0.070017
Target:  5'- gGGCGCCa--GGGGGCGCcggucgGGUCGCGGCg -3'
miRNA:   3'- -CCGCGGggcCCCCCGCG------CUAGUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 4628 0.79 0.071776
Target:  5'- cGCGCUCCGGGGGGgGCGAcgggaUCgugcgaACGGCc -3'
miRNA:   3'- cCGCGGGGCCCCCCgCGCU-----AG------UGCCG- -5'
5418 3' -65.7 NC_001798.1 + 97835 0.79 0.071776
Target:  5'- uGCGCCCUGacGGcGGGCGCGggCACGGUc -3'
miRNA:   3'- cCGCGGGGC--CC-CCCGCGCuaGUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 4358 0.79 0.073578
Target:  5'- aGCGCCggCGGGGGGCGCGccgGCGGCg -3'
miRNA:   3'- cCGCGGg-GCCCCCCGCGCuagUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 137632 0.79 0.073578
Target:  5'- cGCGCCCgcuCGGGGGGCGCGAagCACGu- -3'
miRNA:   3'- cCGCGGG---GCCCCCCGCGCUa-GUGCcg -5'
5418 3' -65.7 NC_001798.1 + 102209 0.79 0.075423
Target:  5'- cGGCGCgCCGGGagucgaccGGGCGCGGcUCGgGGCg -3'
miRNA:   3'- -CCGCGgGGCCC--------CCCGCGCU-AGUgCCG- -5'
5418 3' -65.7 NC_001798.1 + 90387 0.78 0.083255
Target:  5'- -aCGCCgUCGGGGGGCGCGGUUgggcCGGCg -3'
miRNA:   3'- ccGCGG-GGCCCCCCGCGCUAGu---GCCG- -5'
5418 3' -65.7 NC_001798.1 + 54376 0.78 0.087457
Target:  5'- cGGC-CCaCCGGGGGGcCGCGG-CGCGGUc -3'
miRNA:   3'- -CCGcGG-GGCCCCCC-GCGCUaGUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 23927 0.78 0.087457
Target:  5'- gGGCGCCCCGGcgcccguguGGGCGcCGAgCugGGCg -3'
miRNA:   3'- -CCGCGGGGCCc--------CCCGC-GCUaGugCCG- -5'
5418 3' -65.7 NC_001798.1 + 31334 0.78 0.089633
Target:  5'- uGCGgCCggCGGGGGGCGCGcgcaggCGCGGCg -3'
miRNA:   3'- cCGCgGG--GCCCCCCGCGCua----GUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 1647 0.77 0.098861
Target:  5'- cGGCGCgUCGGGGuacaGGCGCGcgugCGCGGCc -3'
miRNA:   3'- -CCGCGgGGCCCC----CCGCGCua--GUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 2584 0.77 0.10559
Target:  5'- gGGCGUCCgcgcggcucuucuuCGGGGGGCGCGGggcgccgCcCGGCg -3'
miRNA:   3'- -CCGCGGG--------------GCCCCCCGCGCUa------GuGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.