miRNA display CGI


Results 41 - 60 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5418 3' -65.7 NC_001798.1 + 79106 0.74 0.167587
Target:  5'- gGGCGUCCUGGGcgccaaGGGCGCcGAgcgCGCGGa -3'
miRNA:   3'- -CCGCGGGGCCC------CCCGCG-CUa--GUGCCg -5'
5418 3' -65.7 NC_001798.1 + 4214 0.74 0.167587
Target:  5'- cGGCGCUggcGGGGGCGCGG--GCGGCg -3'
miRNA:   3'- -CCGCGGggcCCCCCGCGCUagUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 2528 0.74 0.167587
Target:  5'- cGGCGUCggcggggCGGGGGGCGCGGccccCGCGGg -3'
miRNA:   3'- -CCGCGGg------GCCCCCCGCGCUa---GUGCCg -5'
5418 3' -65.7 NC_001798.1 + 138191 0.74 0.171159
Target:  5'- cGGUGCCgCCcuugccgaacccaGGGaGGGUGUGGUCgACGGCg -3'
miRNA:   3'- -CCGCGG-GG-------------CCC-CCCGCGCUAG-UGCCG- -5'
5418 3' -65.7 NC_001798.1 + 26354 0.74 0.17156
Target:  5'- cGGCGgCCCGGcGGagcuGCGCGGgcCGCGGCg -3'
miRNA:   3'- -CCGCgGGGCC-CCc---CGCGCUa-GUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 64148 0.74 0.17156
Target:  5'- cGGUGCUCgCGGGGgagacGGCGgGAUCcAUGGCg -3'
miRNA:   3'- -CCGCGGG-GCCCC-----CCGCgCUAG-UGCCG- -5'
5418 3' -65.7 NC_001798.1 + 150338 0.74 0.175208
Target:  5'- uGCGCgaCCGGGGcGCGCGGUgcgcguccaccggCACGGCg -3'
miRNA:   3'- cCGCGg-GGCCCCcCGCGCUA-------------GUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 152032 0.74 0.175617
Target:  5'- -uCGCCCCcccagagggucGGGGGGCG-GcgCACGGCc -3'
miRNA:   3'- ccGCGGGG-----------CCCCCCGCgCuaGUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 27204 0.74 0.175617
Target:  5'- gGGCGggggaagcCCCCGGggcGGGGCGCGGgggagGCGGCc -3'
miRNA:   3'- -CCGC--------GGGGCC---CCCCGCGCUag---UGCCG- -5'
5418 3' -65.7 NC_001798.1 + 46578 0.74 0.179341
Target:  5'- aGgGCCCCGGGGGcaaacccGCGCGucccguUCGgGGCu -3'
miRNA:   3'- cCgCGGGGCCCCC-------CGCGCu-----AGUgCCG- -5'
5418 3' -65.7 NC_001798.1 + 147238 0.74 0.17976
Target:  5'- gGGgGCCCCGGGgccccGGGcCGCGccgGCGGCg -3'
miRNA:   3'- -CCgCGGGGCCC-----CCC-GCGCuagUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 22390 0.74 0.17976
Target:  5'- gGGCGgaaCCCCGGcgagccGGGGCGCG---GCGGCg -3'
miRNA:   3'- -CCGC---GGGGCC------CCCCGCGCuagUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 27564 0.74 0.17976
Target:  5'- cGGCGCCCgCGGGGGa-GCGG-C-CGGCu -3'
miRNA:   3'- -CCGCGGG-GCCCCCcgCGCUaGuGCCG- -5'
5418 3' -65.7 NC_001798.1 + 36399 0.74 0.181441
Target:  5'- cGGCGCCggggccccccugCCGGGcggggcgguggggcgGGGuCGgGGUCGCGGCg -3'
miRNA:   3'- -CCGCGG------------GGCCC---------------CCC-GCgCUAGUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 52957 0.73 0.183988
Target:  5'- gGGCGCacgugUCCGGGaGGcGCGCGAccgggCugGGCg -3'
miRNA:   3'- -CCGCG-----GGGCCC-CC-CGCGCUa----GugCCG- -5'
5418 3' -65.7 NC_001798.1 + 2953 0.73 0.183988
Target:  5'- aGGCGCgCaGGcGGGGCGCGucggcgUGCGGCg -3'
miRNA:   3'- -CCGCGgGgCC-CCCCGCGCua----GUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 4399 0.73 0.188305
Target:  5'- uGGUgGUgUCGGcGGGGCGCcgggGGUCGCGGCg -3'
miRNA:   3'- -CCG-CGgGGCC-CCCCGCG----CUAGUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 138713 0.73 0.188305
Target:  5'- cGGCcagaucagaaGCCCCGGGccGGCGCGcucCGCGGCc -3'
miRNA:   3'- -CCG----------CGGGGCCCc-CCGCGCua-GUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 154044 0.73 0.19271
Target:  5'- aGCGCgCC--GGGGCGCGG-CACGGCu -3'
miRNA:   3'- cCGCGgGGccCCCCGCGCUaGUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 9157 0.73 0.201329
Target:  5'- cGGCGCCgcccgcgCCGGGGGGCaG-GGUCucUGGCg -3'
miRNA:   3'- -CCGCGG-------GGCCCCCCG-CgCUAGu-GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.