miRNA display CGI


Results 61 - 80 of 319 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5418 3' -65.7 NC_001798.1 + 52778 0.73 0.201792
Target:  5'- cGGCGCCCCGGGcGccCGUGAgcgggACGGCa -3'
miRNA:   3'- -CCGCGGGGCCC-CccGCGCUag---UGCCG- -5'
5418 3' -65.7 NC_001798.1 + 52332 0.73 0.206471
Target:  5'- gGGCaGCCCCGGGGucguGGCGgccgagcaCGAggcgCugGGCg -3'
miRNA:   3'- -CCG-CGGGGCCCC----CCGC--------GCUa---GugCCG- -5'
5418 3' -65.7 NC_001798.1 + 2630 0.73 0.208369
Target:  5'- cGGCGCCCUGGccGGGGCggggcucuugcgcuuGCGcgCcucccGCGGCg -3'
miRNA:   3'- -CCGCGGGGCC--CCCCG---------------CGCuaG-----UGCCG- -5'
5418 3' -65.7 NC_001798.1 + 16940 0.73 0.209802
Target:  5'- cGCcCCCCGGGGGgaGCGgGGUCacuugggugaaauaGCGGCa -3'
miRNA:   3'- cCGcGGGGCCCCC--CGCgCUAG--------------UGCCG- -5'
5418 3' -65.7 NC_001798.1 + 24703 0.73 0.211243
Target:  5'- cGCGCCCCcgcgcccGGGGCccGCGggCGCGGCc -3'
miRNA:   3'- cCGCGGGGcc-----CCCCG--CGCuaGUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 3423 0.73 0.211243
Target:  5'- cGCGCgCCaGcaGGGGCGCGuaggCGCGGCg -3'
miRNA:   3'- cCGCGgGGcC--CCCCGCGCua--GUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 132141 0.73 0.211243
Target:  5'- uGCGCCgCCGGGGGcCgGCGggCGgGGCg -3'
miRNA:   3'- cCGCGG-GGCCCCCcG-CGCuaGUgCCG- -5'
5418 3' -65.7 NC_001798.1 + 23884 0.72 0.21611
Target:  5'- gGGCGCCCgaggCGGaGGaGGCGCGggCcCGGUu -3'
miRNA:   3'- -CCGCGGG----GCC-CC-CCGCGCuaGuGCCG- -5'
5418 3' -65.7 NC_001798.1 + 95523 0.72 0.21611
Target:  5'- cGCGCCCUGGa--GCGCGggCAUGGCg -3'
miRNA:   3'- cCGCGGGGCCcccCGCGCuaGUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 57165 0.72 0.21611
Target:  5'- uGGCGCCCgGGccGGCGCccuccgcccaGAUCACGuGCg -3'
miRNA:   3'- -CCGCGGGgCCccCCGCG----------CUAGUGC-CG- -5'
5418 3' -65.7 NC_001798.1 + 24283 0.72 0.21611
Target:  5'- cGCGCCCCuGcuGGcGCGCGAgaaCGCGGCg -3'
miRNA:   3'- cCGCGGGGcCc-CC-CGCGCUa--GUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 47011 0.72 0.221073
Target:  5'- gGGCGUgCCCGGGGaGcCGcCGAaCGCGGCa -3'
miRNA:   3'- -CCGCG-GGGCCCCcC-GC-GCUaGUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 67616 0.72 0.221073
Target:  5'- cGCGCUCCGGcGaGGGCG-GAU-GCGGCa -3'
miRNA:   3'- cCGCGGGGCC-C-CCCGCgCUAgUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 27278 0.72 0.221073
Target:  5'- uGGCGCgCgGGGGGGaggggcugcCGCGAgcuCGGCg -3'
miRNA:   3'- -CCGCGgGgCCCCCC---------GCGCUaguGCCG- -5'
5418 3' -65.7 NC_001798.1 + 36570 0.72 0.226133
Target:  5'- cGGCGgCCgGGcgGGGGCGCGcg-GCGGCc -3'
miRNA:   3'- -CCGCgGGgCC--CCCCGCGCuagUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 36612 0.72 0.226133
Target:  5'- cGGCGgCCgGGcgGGGGCGCGcg-GCGGCc -3'
miRNA:   3'- -CCGCgGGgCC--CCCCGCGCuagUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 36528 0.72 0.226133
Target:  5'- cGGCGgCCgGGcgGGGGCGCGcg-GCGGCc -3'
miRNA:   3'- -CCGCgGGgCC--CCCCGCGCuagUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 77694 0.72 0.226133
Target:  5'- aGCGCgCCCGGGGcaGCaGCGAgcgCugGGCc -3'
miRNA:   3'- cCGCG-GGGCCCCc-CG-CGCUa--GugCCG- -5'
5418 3' -65.7 NC_001798.1 + 106060 0.72 0.231291
Target:  5'- cGUGUCggggaGGGGGGCcuuugcggucugGCGGUCGCGGCg -3'
miRNA:   3'- cCGCGGgg---CCCCCCG------------CGCUAGUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 34595 0.72 0.231291
Target:  5'- cGGCGUCUCGGuGGGaCGCGggCaaaggGCGGCg -3'
miRNA:   3'- -CCGCGGGGCCcCCC-GCGCuaG-----UGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.