miRNA display CGI


Results 81 - 100 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5418 3' -65.7 NC_001798.1 + 72512 0.72 0.231291
Target:  5'- uGGCGCCCCGaGGccauGGGCGa---CGCGGUg -3'
miRNA:   3'- -CCGCGGGGC-CC----CCCGCgcuaGUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 93280 0.72 0.236017
Target:  5'- cGGCGCCgUCGGGGcguaccuGGCGCGcgcCGCGGg -3'
miRNA:   3'- -CCGCGG-GGCCCC-------CCGCGCua-GUGCCg -5'
5418 3' -65.7 NC_001798.1 + 153787 0.72 0.238677
Target:  5'- cGCGCUCCuugcgcggcggcggcGGGGGGCaggcgGCGGcaggCGCGGCg -3'
miRNA:   3'- cCGCGGGG---------------CCCCCCG-----CGCUa---GUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 154381 0.71 0.252918
Target:  5'- gGGUGUuuUuugggGGGGGGCGCGAagGCGGg -3'
miRNA:   3'- -CCGCGggG-----CCCCCCGCGCUagUGCCg -5'
5418 3' -65.7 NC_001798.1 + 43 0.71 0.252918
Target:  5'- gGGUGUuuUuugggGGGGGGCGCGAagGCGGg -3'
miRNA:   3'- -CCGCGggG-----CCCCCCGCGCUagUGCCg -5'
5418 3' -65.7 NC_001798.1 + 26188 0.71 0.252918
Target:  5'- cGGCGCUggacggCCGGGccgccgccucGGGCGCGGgcgacgcCAUGGCg -3'
miRNA:   3'- -CCGCGG------GGCCC----------CCCGCGCUa------GUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 15827 0.71 0.258008
Target:  5'- aGGCGCCgcccgguUCGGGGGGCcCGAacgUCGgGGUc -3'
miRNA:   3'- -CCGCGG-------GGCCCCCCGcGCU---AGUgCCG- -5'
5418 3' -65.7 NC_001798.1 + 2083 0.71 0.258008
Target:  5'- cGGCGgaccaCUCCGGGGggggcccgcccccGGCGCGGccCGCGGCc -3'
miRNA:   3'- -CCGC-----GGGGCCCC-------------CCGCGCUa-GUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 3196 0.71 0.258579
Target:  5'- --gGCCCCGGccGGCGCGGaggcgggCGCGGCg -3'
miRNA:   3'- ccgCGGGGCCccCCGCGCUa------GUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 135362 0.71 0.258579
Target:  5'- cGCGCUCCGGcagcugcucGGCGgGGUCAUGGCc -3'
miRNA:   3'- cCGCGGGGCCcc-------CCGCgCUAGUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 88990 0.71 0.25915
Target:  5'- gGGUGCUCUGGGGGaucCGCGAgcggaucugcuuucgCAUGGCc -3'
miRNA:   3'- -CCGCGGGGCCCCCc--GCGCUa--------------GUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 174 0.71 0.263761
Target:  5'- cGCGCCgCGGGgcugccuucccgcGGGCGCccccgCGCGGCu -3'
miRNA:   3'- cCGCGGgGCCC-------------CCCGCGcua--GUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 154512 0.71 0.263761
Target:  5'- cGCGCCgCGGGgcugccuucccgcGGGCGCccccgCGCGGCu -3'
miRNA:   3'- cCGCGGgGCCC-------------CCCGCGcua--GUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 149987 0.71 0.264342
Target:  5'- cGGCGCCCgCGGacgccGGGGCGa----GCGGCc -3'
miRNA:   3'- -CCGCGGG-GCC-----CCCCGCgcuagUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 48371 0.71 0.264342
Target:  5'- gGGcCGCCCCGcGGGGCgugccgccGCGAccgCACGGg -3'
miRNA:   3'- -CC-GCGGGGCcCCCCG--------CGCUa--GUGCCg -5'
5418 3' -65.7 NC_001798.1 + 20355 0.71 0.264342
Target:  5'- uGGCGCUgCCGGGcGGGUuCGGg-GCGGCa -3'
miRNA:   3'- -CCGCGG-GGCCC-CCCGcGCUagUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 32719 0.71 0.264342
Target:  5'- gGGCaCCCUGGuGGGCGCGcuggacuucCACGGCc -3'
miRNA:   3'- -CCGcGGGGCCcCCCGCGCua-------GUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 87987 0.71 0.27021
Target:  5'- cGCGCcuCCCGGGGGGUcggcauGCGA---CGGCg -3'
miRNA:   3'- cCGCG--GGGCCCCCCG------CGCUaguGCCG- -5'
5418 3' -65.7 NC_001798.1 + 86150 0.71 0.27021
Target:  5'- aGCGCaCCgCGGGGcgcgcauGCGCGA-CGCGGCc -3'
miRNA:   3'- cCGCG-GG-GCCCCc------CGCGCUaGUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 111822 0.71 0.27021
Target:  5'- gGGCGUCCaGGGGcuGGCGCGGg-GCGGg -3'
miRNA:   3'- -CCGCGGGgCCCC--CCGCGCUagUGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.