Results 21 - 40 of 319 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5418 | 3' | -65.7 | NC_001798.1 | + | 11642 | 0.66 | 0.521358 |
Target: 5'- gGGCGUCCCuguguccccGGGGGCGgGGgu-CGGg -3' miRNA: 3'- -CCGCGGGGc--------CCCCCGCgCUaguGCCg -5' |
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5418 | 3' | -65.7 | NC_001798.1 | + | 24816 | 0.66 | 0.521358 |
Target: 5'- uGCGCCUgcgCGGGGaccuGCGCGuggCcgGCGGCa -3' miRNA: 3'- cCGCGGG---GCCCCc---CGCGCua-G--UGCCG- -5' |
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5418 | 3' | -65.7 | NC_001798.1 | + | 27411 | 0.66 | 0.521358 |
Target: 5'- uGGCGUCuUCGGGGGG-GCGGggagcUugGGa -3' miRNA: 3'- -CCGCGG-GGCCCCCCgCGCUa----GugCCg -5' |
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5418 | 3' | -65.7 | NC_001798.1 | + | 103012 | 0.66 | 0.521358 |
Target: 5'- aGGUGCgCCCGGccaGCGCGAgcuCGGCc -3' miRNA: 3'- -CCGCG-GGGCCcccCGCGCUaguGCCG- -5' |
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5418 | 3' | -65.7 | NC_001798.1 | + | 1747 | 0.66 | 0.521358 |
Target: 5'- cGCGCCgCCGGccagcgcacGGCGCacugCACGGCg -3' miRNA: 3'- cCGCGG-GGCCcc-------CCGCGcua-GUGCCG- -5' |
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5418 | 3' | -65.7 | NC_001798.1 | + | 52158 | 0.66 | 0.521358 |
Target: 5'- cGUGCuCCCGcGGGaGGcCGCGuuugCGgGGCg -3' miRNA: 3'- cCGCG-GGGC-CCC-CC-GCGCua--GUgCCG- -5' |
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5418 | 3' | -65.7 | NC_001798.1 | + | 34014 | 0.66 | 0.51592 |
Target: 5'- cGCGCCCacgcgguagaggaaGGGgacGGGCGCcacaccCACGGCu -3' miRNA: 3'- cCGCGGGg-------------CCC---CCCGCGcua---GUGCCG- -5' |
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5418 | 3' | -65.7 | NC_001798.1 | + | 150642 | 0.66 | 0.515016 |
Target: 5'- gGGCuGUCUcgCGGGGGGCGUccugcccuccgccgcCGCGGCg -3' miRNA: 3'- -CCG-CGGG--GCCCCCCGCGcua------------GUGCCG- -5' |
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5418 | 3' | -65.7 | NC_001798.1 | + | 40816 | 0.66 | 0.512308 |
Target: 5'- aGCGCCCCcuGGGGGCcgcugguuccGCGuuUUugGGg -3' miRNA: 3'- cCGCGGGGc-CCCCCG----------CGCu-AGugCCg -5' |
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5418 | 3' | -65.7 | NC_001798.1 | + | 21805 | 0.66 | 0.512308 |
Target: 5'- gGGCccGCCUCGGGGcGGagccCGCGGgaugaCGCGGg -3' miRNA: 3'- -CCG--CGGGGCCCC-CC----GCGCUa----GUGCCg -5' |
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5418 | 3' | -65.7 | NC_001798.1 | + | 26924 | 0.66 | 0.512308 |
Target: 5'- gGGCGggggUCGGGcGGGCGgGGUCG-GGCg -3' miRNA: 3'- -CCGCgg--GGCCC-CCCGCgCUAGUgCCG- -5' |
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5418 | 3' | -65.7 | NC_001798.1 | + | 9100 | 0.66 | 0.512308 |
Target: 5'- gGGCcacgggaaagGCCgCGGGGGaGCcgccgcgagGUGGUCuGCGGCa -3' miRNA: 3'- -CCG----------CGGgGCCCCC-CG---------CGCUAG-UGCCG- -5' |
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5418 | 3' | -65.7 | NC_001798.1 | + | 103268 | 0.66 | 0.512308 |
Target: 5'- -aCGCuccuCCCGGGaGaGCGCGGgucCGCGGCg -3' miRNA: 3'- ccGCG----GGGCCCcC-CGCGCUa--GUGCCG- -5' |
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5418 | 3' | -65.7 | NC_001798.1 | + | 149675 | 0.66 | 0.512308 |
Target: 5'- cGgGCCCCGGgcucGGGGCcGCccUCGCguGGCg -3' miRNA: 3'- cCgCGGGGCC----CCCCG-CGcuAGUG--CCG- -5' |
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5418 | 3' | -65.7 | NC_001798.1 | + | 2214 | 0.66 | 0.506909 |
Target: 5'- cGGCGCagCGGGcccgaggcgcgcagcGGGC-CGAagGCGGCg -3' miRNA: 3'- -CCGCGggGCCC---------------CCCGcGCUagUGCCG- -5' |
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5418 | 3' | -65.7 | NC_001798.1 | + | 70577 | 0.66 | 0.503324 |
Target: 5'- cGGCgGCCCUGGGGccGGUGCGcGUC-CGcCa -3' miRNA: 3'- -CCG-CGGGGCCCC--CCGCGC-UAGuGCcG- -5' |
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5418 | 3' | -65.7 | NC_001798.1 | + | 105383 | 0.66 | 0.503324 |
Target: 5'- cGGCGgCCUGGaGGGCGgCGuUCuccagggccgccGCGGCc -3' miRNA: 3'- -CCGCgGGGCCcCCCGC-GCuAG------------UGCCG- -5' |
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5418 | 3' | -65.7 | NC_001798.1 | + | 108303 | 0.66 | 0.503324 |
Target: 5'- uGGCGCCCCc--GGGCGaacucaaccUGAcUACGGCa -3' miRNA: 3'- -CCGCGGGGcccCCCGC---------GCUaGUGCCG- -5' |
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5418 | 3' | -65.7 | NC_001798.1 | + | 48153 | 0.66 | 0.503324 |
Target: 5'- uGCGCCgCGGucGGGCGCc-UgGCGGCc -3' miRNA: 3'- cCGCGGgGCCc-CCCGCGcuAgUGCCG- -5' |
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5418 | 3' | -65.7 | NC_001798.1 | + | 147499 | 0.66 | 0.503324 |
Target: 5'- --gGCUCCGGGGGGgGgGggCGCcuGCg -3' miRNA: 3'- ccgCGGGGCCCCCCgCgCuaGUGc-CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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