miRNA display CGI


Results 41 - 60 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5418 3' -65.7 NC_001798.1 + 78852 0.66 0.503324
Target:  5'- cGGCacgccgGCCgCCuGGGGGCGCucuuuGAUacuCGGCg -3'
miRNA:   3'- -CCG------CGG-GGcCCCCCGCG-----CUAgu-GCCG- -5'
5418 3' -65.7 NC_001798.1 + 2430 0.66 0.502429
Target:  5'- uGGCuggGCCCCGGcGGcuggcGGCGCcagccgcccugcgGGUCGgGGCc -3'
miRNA:   3'- -CCG---CGGGGCC-CC-----CCGCG-------------CUAGUgCCG- -5'
5418 3' -65.7 NC_001798.1 + 118295 0.66 0.500642
Target:  5'- -cCGCCCCccccaGGGGGGCuuggacugggagccGCGAUUccgAgGGCa -3'
miRNA:   3'- ccGCGGGG-----CCCCCCG--------------CGCUAG---UgCCG- -5'
5418 3' -65.7 NC_001798.1 + 69289 0.66 0.494409
Target:  5'- aGGUGauagCGGGGGGCGCcGGggACGGUc -3'
miRNA:   3'- -CCGCggg-GCCCCCCGCG-CUagUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 74391 0.66 0.494409
Target:  5'- -cCGgCCCGGGGGcCGUGG-CGcCGGCg -3'
miRNA:   3'- ccGCgGGGCCCCCcGCGCUaGU-GCCG- -5'
5418 3' -65.7 NC_001798.1 + 96973 0.66 0.494409
Target:  5'- uGGCGCggaCCGcGGcGGGCGgCGGggcCAgGGCc -3'
miRNA:   3'- -CCGCGg--GGC-CC-CCCGC-GCUa--GUgCCG- -5'
5418 3' -65.7 NC_001798.1 + 16174 0.66 0.494409
Target:  5'- gGGCgGCCCgCGGGGaccGGgGgGAcgCACGGg -3'
miRNA:   3'- -CCG-CGGG-GCCCC---CCgCgCUa-GUGCCg -5'
5418 3' -65.7 NC_001798.1 + 79376 0.66 0.494409
Target:  5'- cGGCGgCCagacGGGCGCGggCGCGGa -3'
miRNA:   3'- -CCGCgGGgcccCCCGCGCuaGUGCCg -5'
5418 3' -65.7 NC_001798.1 + 95001 0.66 0.494409
Target:  5'- uGgGCCCCGcaGGGcGGCGCGggCcuggaGGCc -3'
miRNA:   3'- cCgCGGGGC--CCC-CCGCGCuaGug---CCG- -5'
5418 3' -65.7 NC_001798.1 + 91952 0.66 0.494409
Target:  5'- uGCccaaCCCCGGGcccccccguccGGCGCGAUC-CGGUg -3'
miRNA:   3'- cCGc---GGGGCCCc----------CCGCGCUAGuGCCG- -5'
5418 3' -65.7 NC_001798.1 + 106105 0.66 0.493521
Target:  5'- cGGCGCCgcgaccgCCGGGucugcGGUuccgGCGG-CACGGCa -3'
miRNA:   3'- -CCGCGG-------GGCCCc----CCG----CGCUaGUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 53647 0.66 0.493521
Target:  5'- -aCGCCgCCGcgguggcGGGGuuGCGCGA-CGCGGCc -3'
miRNA:   3'- ccGCGG-GGC-------CCCC--CGCGCUaGUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 31969 0.66 0.493521
Target:  5'- cGCcCCCCaGGGGGUGgGggCcaagaggGCGGCg -3'
miRNA:   3'- cCGcGGGGcCCCCCGCgCuaG-------UGCCG- -5'
5418 3' -65.7 NC_001798.1 + 25667 0.66 0.493521
Target:  5'- uGGCgGCCCUGGGcaaccggcucugcGGGCcCGc-CACGGCc -3'
miRNA:   3'- -CCG-CGGGGCCC-------------CCCGcGCuaGUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 97507 0.66 0.489094
Target:  5'- aGGaagaGCCCCGggccgccgcggaggaGGGGGgGCGGaggCGUGGCg -3'
miRNA:   3'- -CCg---CGGGGC---------------CCCCCgCGCUa--GUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 109457 0.66 0.485566
Target:  5'- cGCGCCUCGGGcaucugguGGcCGCGAUCcuCGaGCg -3'
miRNA:   3'- cCGCGGGGCCCc-------CC-GCGCUAGu-GC-CG- -5'
5418 3' -65.7 NC_001798.1 + 13537 0.66 0.485566
Target:  5'- cGCuucaCCCCGGGGGG-GuCGGUCAgcUGGUc -3'
miRNA:   3'- cCGc---GGGGCCCCCCgC-GCUAGU--GCCG- -5'
5418 3' -65.7 NC_001798.1 + 123519 0.66 0.485566
Target:  5'- uGGCGCgucgUUCGGGGGGa-CGA--GCGGCu -3'
miRNA:   3'- -CCGCG----GGGCCCCCCgcGCUagUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 119422 0.66 0.485566
Target:  5'- uGGCccugGCCCCGGcgguucGGGUGUGuacguUCgACGGCg -3'
miRNA:   3'- -CCG----CGGGGCCc-----CCCGCGCu----AG-UGCCG- -5'
5418 3' -65.7 NC_001798.1 + 87767 0.66 0.485566
Target:  5'- cGCGCggccacgucgUCCGGGGGGUGCcacGUCuCGGg -3'
miRNA:   3'- cCGCG----------GGGCCCCCCGCGc--UAGuGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.