miRNA display CGI


Results 61 - 80 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5418 3' -65.7 NC_001798.1 + 123519 0.66 0.485566
Target:  5'- uGGCGCgucgUUCGGGGGGa-CGA--GCGGCu -3'
miRNA:   3'- -CCGCG----GGGCCCCCCgcGCUagUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 13537 0.66 0.485566
Target:  5'- cGCuucaCCCCGGGGGG-GuCGGUCAgcUGGUc -3'
miRNA:   3'- cCGc---GGGGCCCCCCgC-GCUAGU--GCCG- -5'
5418 3' -65.7 NC_001798.1 + 109457 0.66 0.485566
Target:  5'- cGCGCCUCGGGcaucugguGGcCGCGAUCcuCGaGCg -3'
miRNA:   3'- cCGCGGGGCCCc-------CC-GCGCUAGu-GC-CG- -5'
5418 3' -65.7 NC_001798.1 + 138492 0.66 0.485566
Target:  5'- cGCGUguuCCCGGaGGGCGUGGcacgcgacgaucUCGgGGCa -3'
miRNA:   3'- cCGCG---GGGCCcCCCGCGCU------------AGUgCCG- -5'
5418 3' -65.7 NC_001798.1 + 6385 0.67 0.4768
Target:  5'- gGGgGCCggggggCCGGGGGGCcGgGGggACGGg -3'
miRNA:   3'- -CCgCGG------GGCCCCCCG-CgCUagUGCCg -5'
5418 3' -65.7 NC_001798.1 + 24460 0.67 0.4768
Target:  5'- cGGCGCCgCGGGGGuGCuCGccgccCugGGg -3'
miRNA:   3'- -CCGCGGgGCCCCC-CGcGCua---GugCCg -5'
5418 3' -65.7 NC_001798.1 + 35805 0.67 0.4768
Target:  5'- gGGCGgCggggGGGGGGCGuCGGgacUCGCGGa -3'
miRNA:   3'- -CCGCgGgg--CCCCCCGC-GCU---AGUGCCg -5'
5418 3' -65.7 NC_001798.1 + 24145 0.67 0.4768
Target:  5'- cGUGCCCCaccuGGGGuaCGCcAUgGCGGCg -3'
miRNA:   3'- cCGCGGGG----CCCCccGCGcUAgUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 47215 0.67 0.4768
Target:  5'- -cCGCCCUguugggaagGGGuGGGCGUGucgUugGGCg -3'
miRNA:   3'- ccGCGGGG---------CCC-CCCGCGCua-GugCCG- -5'
5418 3' -65.7 NC_001798.1 + 47845 0.67 0.4768
Target:  5'- cGCGCuccuccacccCCCGGGGGcccCGUGggCGcCGGCg -3'
miRNA:   3'- cCGCG----------GGGCCCCCc--GCGCuaGU-GCCG- -5'
5418 3' -65.7 NC_001798.1 + 498 0.67 0.468113
Target:  5'- -cCGCCCCGGGGGcuucccccGCcccuccccccGCGccCGCGGCc -3'
miRNA:   3'- ccGCGGGGCCCCC--------CG----------CGCuaGUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 15502 0.67 0.468113
Target:  5'- uGGUGUggUGGGGGGCGUuuUCGCuGCg -3'
miRNA:   3'- -CCGCGggGCCCCCCGCGcuAGUGcCG- -5'
5418 3' -65.7 NC_001798.1 + 60868 0.67 0.468113
Target:  5'- cGCGUCCUccgaaGGGGGGCGgCGGccgCACcGCc -3'
miRNA:   3'- cCGCGGGG-----CCCCCCGC-GCUa--GUGcCG- -5'
5418 3' -65.7 NC_001798.1 + 53610 0.67 0.468113
Target:  5'- cGCGCCCCGuucaagagcGGGGC-CGc-CGCGGCc -3'
miRNA:   3'- cCGCGGGGCc--------CCCCGcGCuaGUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 126712 0.67 0.468113
Target:  5'- cGCGaCCCUgcucguGGGGGaGUGCGcucuucgCGCGGCc -3'
miRNA:   3'- cCGC-GGGG------CCCCC-CGCGCua-----GUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 154128 0.67 0.468113
Target:  5'- cGGCGgggaCCCCGGc-GGCGgGA-CAUGGCg -3'
miRNA:   3'- -CCGC----GGGGCCccCCGCgCUaGUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 98919 0.67 0.46294
Target:  5'- cGCG-CCCGGaGGGGCagaacuacacggaggGC-AUCGCGGUg -3'
miRNA:   3'- cCGCgGGGCC-CCCCG---------------CGcUAGUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 124869 0.67 0.46294
Target:  5'- uGGCGCCU-GGGGacuagaaacacgguGGCGCGcuggcggaagugccgCACGGCc -3'
miRNA:   3'- -CCGCGGGgCCCC--------------CCGCGCua-------------GUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 93079 0.67 0.459507
Target:  5'- gGGUaaGCCCCaGcGGGGCGCGcgCGacgcCGGg -3'
miRNA:   3'- -CCG--CGGGGcC-CCCCGCGCuaGU----GCCg -5'
5418 3' -65.7 NC_001798.1 + 90804 0.67 0.459507
Target:  5'- cGGCgacgcgaugGCUUCGGGGGucagacccagaaGCGUGAUgACGGUc -3'
miRNA:   3'- -CCG---------CGGGGCCCCC------------CGCGCUAgUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.