miRNA display CGI


Results 1 - 20 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5418 3' -65.7 NC_001798.1 + 43 0.71 0.252918
Target:  5'- gGGUGUuuUuugggGGGGGGCGCGAagGCGGg -3'
miRNA:   3'- -CCGCGggG-----CCCCCCGCGCUagUGCCg -5'
5418 3' -65.7 NC_001798.1 + 174 0.71 0.263761
Target:  5'- cGCGCCgCGGGgcugccuucccgcGGGCGCccccgCGCGGCu -3'
miRNA:   3'- cCGCGGgGCCC-------------CCCGCGcua--GUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 439 0.7 0.320946
Target:  5'- cGCGCgCCacGGGGCuGCGGUCccGCGGCc -3'
miRNA:   3'- cCGCGgGGccCCCCG-CGCUAG--UGCCG- -5'
5418 3' -65.7 NC_001798.1 + 498 0.67 0.468113
Target:  5'- -cCGCCCCGGGGGcuucccccGCcccuccccccGCGccCGCGGCc -3'
miRNA:   3'- ccGCGGGGCCCCC--------CG----------CGCuaGUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 1139 0.68 0.417802
Target:  5'- cGCGCCUCGGc-GGCGUGGccagcccCGCGGCg -3'
miRNA:   3'- cCGCGGGGCCccCCGCGCUa------GUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 1277 0.67 0.434211
Target:  5'- cGCGCagcaCCaGcGGGGGCGCG-UCGCcgucgGGCu -3'
miRNA:   3'- cCGCGg---GG-C-CCCCCGCGCuAGUG-----CCG- -5'
5418 3' -65.7 NC_001798.1 + 1514 0.68 0.42596
Target:  5'- cGGCGgCCCGGccguccagcgccGGGaGCaCGG-CGCGGCg -3'
miRNA:   3'- -CCGCgGGGCC------------CCC-CGcGCUaGUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 1647 0.77 0.098861
Target:  5'- cGGCGCgUCGGGGuacaGGCGCGcgugCGCGGCc -3'
miRNA:   3'- -CCGCGgGGCCCC----CCGCGCua--GUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 1747 0.66 0.521358
Target:  5'- cGCGCCgCCGGccagcgcacGGCGCacugCACGGCg -3'
miRNA:   3'- cCGCGG-GGCCcc-------CCGCGcua-GUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 1826 0.66 0.539638
Target:  5'- cGgGCCCguCGGcGGGCcaguccgcgGCGcgCACGGCg -3'
miRNA:   3'- cCgCGGG--GCCcCCCG---------CGCuaGUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 1968 0.74 0.161782
Target:  5'- cGCGCCCagcgccgagacgucGGGGGCGCGGUCcaguugcccgcccagGCGGCc -3'
miRNA:   3'- cCGCGGGgc------------CCCCCGCGCUAG---------------UGCCG- -5'
5418 3' -65.7 NC_001798.1 + 2083 0.71 0.258008
Target:  5'- cGGCGgaccaCUCCGGGGggggcccgcccccGGCGCGGccCGCGGCc -3'
miRNA:   3'- -CCGC-----GGGGCCCC-------------CCGCGCUa-GUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 2214 0.66 0.506909
Target:  5'- cGGCGCagCGGGcccgaggcgcgcagcGGGC-CGAagGCGGCg -3'
miRNA:   3'- -CCGCGggGCCC---------------CCCGcGCUagUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 2258 0.81 0.054565
Target:  5'- cGCGCCgCCGGGGGGCGgGGcggcgcagcgCGCGGCc -3'
miRNA:   3'- cCGCGG-GGCCCCCCGCgCUa---------GUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 2430 0.66 0.502429
Target:  5'- uGGCuggGCCCCGGcGGcuggcGGCGCcagccgcccugcgGGUCGgGGCc -3'
miRNA:   3'- -CCG---CGGGGCC-CC-----CCGCG-------------CUAGUgCCG- -5'
5418 3' -65.7 NC_001798.1 + 2499 0.75 0.142018
Target:  5'- aGCGCCgCGGGGcGCgGCGGcCGCGGCg -3'
miRNA:   3'- cCGCGGgGCCCCcCG-CGCUaGUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 2528 0.74 0.167587
Target:  5'- cGGCGUCggcggggCGGGGGGCGCGGccccCGCGGg -3'
miRNA:   3'- -CCGCGGg------GCCCCCCGCGCUa---GUGCCg -5'
5418 3' -65.7 NC_001798.1 + 2584 0.77 0.10559
Target:  5'- gGGCGUCCgcgcggcucuucuuCGGGGGGCGCGGggcgccgCcCGGCg -3'
miRNA:   3'- -CCGCGGG--------------GCCCCCCGCGCUa------GuGCCG- -5'
5418 3' -65.7 NC_001798.1 + 2630 0.73 0.208369
Target:  5'- cGGCGCCCUGGccGGGGCggggcucuugcgcuuGCGcgCcucccGCGGCg -3'
miRNA:   3'- -CCGCGGGGCC--CCCCG---------------CGCuaG-----UGCCG- -5'
5418 3' -65.7 NC_001798.1 + 2807 0.71 0.276181
Target:  5'- cGGCaGCgCCGGGcccaGGGCcccgGCGAccaggcUCACGGCg -3'
miRNA:   3'- -CCG-CGgGGCCC----CCCG----CGCU------AGUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.