miRNA display CGI


Results 21 - 40 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5418 3' -65.7 NC_001798.1 + 2953 0.73 0.183988
Target:  5'- aGGCGCgCaGGcGGGGCGCGucggcgUGCGGCg -3'
miRNA:   3'- -CCGCGgGgCC-CCCCGCGCua----GUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 2989 0.8 0.068299
Target:  5'- cGGCcgGCCCgCGGGccccGGGCGCGGgggCGCGGCg -3'
miRNA:   3'- -CCG--CGGG-GCCC----CCCGCGCUa--GUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 3196 0.71 0.258579
Target:  5'- --gGCCCCGGccGGCGCGGaggcgggCGCGGCg -3'
miRNA:   3'- ccgCGGGGCCccCCGCGCUa------GUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 3230 0.76 0.129059
Target:  5'- aGGCGCCCCaGGGcGGCGagcaccccCGCGGCg -3'
miRNA:   3'- -CCGCGGGGcCCC-CCGCgcua----GUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 3423 0.73 0.211243
Target:  5'- cGCGCgCCaGcaGGGGCGCGuaggCGCGGCg -3'
miRNA:   3'- cCGCGgGGcC--CCCCGCGCua--GUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 3885 0.76 0.118339
Target:  5'- cGCGCCCC-GGGGGCGgGGggccggccccgggcCACGGCu -3'
miRNA:   3'- cCGCGGGGcCCCCCGCgCUa-------------GUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 4060 0.7 0.294729
Target:  5'- cGGCGCUCCaGGcGGCccGCGGUCGCcGCg -3'
miRNA:   3'- -CCGCGGGGcCCcCCG--CGCUAGUGcCG- -5'
5418 3' -65.7 NC_001798.1 + 4107 0.7 0.307624
Target:  5'- gGGCucgGCCCUGGGcGGGCuCGGcCGgGGCg -3'
miRNA:   3'- -CCG---CGGGGCCC-CCCGcGCUaGUgCCG- -5'
5418 3' -65.7 NC_001798.1 + 4214 0.74 0.167587
Target:  5'- cGGCGCUggcGGGGGCGCGG--GCGGCg -3'
miRNA:   3'- -CCGCGGggcCCCCCGCGCUagUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 4358 0.79 0.073578
Target:  5'- aGCGCCggCGGGGGGCGCGccgGCGGCg -3'
miRNA:   3'- cCGCGGg-GCCCCCCGCGCuagUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 4399 0.73 0.188305
Target:  5'- uGGUgGUgUCGGcGGGGCGCcgggGGUCGCGGCg -3'
miRNA:   3'- -CCG-CGgGGCC-CCCCGCG----CUAGUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 4628 0.79 0.071776
Target:  5'- cGCGCUCCGGGGGGgGCGAcgggaUCgugcgaACGGCc -3'
miRNA:   3'- cCGCGGGGCCCCCCgCGCU-----AG------UGCCG- -5'
5418 3' -65.7 NC_001798.1 + 4838 0.68 0.391572
Target:  5'- cGgGCCgCgCGGcGGGGCGaCGGUCcggguucgggguggGCGGCg -3'
miRNA:   3'- cCgCGG-G-GCC-CCCCGC-GCUAG--------------UGCCG- -5'
5418 3' -65.7 NC_001798.1 + 5621 0.68 0.393912
Target:  5'- cGGCuccGCCCCaaaGGGGGCGgGGccgCAgGGUa -3'
miRNA:   3'- -CCG---CGGGGc--CCCCCGCgCUa--GUgCCG- -5'
5418 3' -65.7 NC_001798.1 + 5758 0.68 0.377724
Target:  5'- cGCGCUCCGccccaaaGGGGGCGgGGccgCAgGGUa -3'
miRNA:   3'- cCGCGGGGC-------CCCCCGCgCUa--GUgCCG- -5'
5418 3' -65.7 NC_001798.1 + 5867 0.68 0.409741
Target:  5'- uGGCGCCCUGcccGGGGCccGCGucauccCGCGGg -3'
miRNA:   3'- -CCGCGGGGCc--CCCCG--CGCua----GUGCCg -5'
5418 3' -65.7 NC_001798.1 + 5960 0.69 0.361253
Target:  5'- cGGCGUCCCGGucgccgccgcaccaGGGGacacCGGcugCGCGGCg -3'
miRNA:   3'- -CCGCGGGGCC--------------CCCCgc--GCUa--GUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 6219 0.7 0.327767
Target:  5'- cGGUGaCCCGGGGGGC-CGGcCGgGGg -3'
miRNA:   3'- -CCGCgGGGCCCCCCGcGCUaGUgCCg -5'
5418 3' -65.7 NC_001798.1 + 6385 0.67 0.4768
Target:  5'- gGGgGCCggggggCCGGGGGGCcGgGGggACGGg -3'
miRNA:   3'- -CCgCGG------GGCCCCCCG-CgCUagUGCCg -5'
5418 3' -65.7 NC_001798.1 + 7181 0.68 0.409741
Target:  5'- cGgGCCCCcgcaccGGGGcGGCGaccauGAUCcgGCGGCg -3'
miRNA:   3'- cCgCGGGG------CCCC-CCGCg----CUAG--UGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.