miRNA display CGI


Results 61 - 80 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5418 3' -65.7 NC_001798.1 + 16940 0.73 0.209802
Target:  5'- cGCcCCCCGGGGGgaGCGgGGUCacuugggugaaauaGCGGCa -3'
miRNA:   3'- cCGcGGGGCCCCC--CGCgCUAG--------------UGCCG- -5'
5418 3' -65.7 NC_001798.1 + 19850 0.67 0.442554
Target:  5'- cGCGCCCgGGGcGGGUaggccagaGCGuu--CGGCg -3'
miRNA:   3'- cCGCGGGgCCC-CCCG--------CGCuaguGCCG- -5'
5418 3' -65.7 NC_001798.1 + 20355 0.71 0.264342
Target:  5'- uGGCGCUgCCGGGcGGGUuCGGg-GCGGCa -3'
miRNA:   3'- -CCGCGG-GGCCC-CCCGcGCUagUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 21805 0.66 0.512308
Target:  5'- gGGCccGCCUCGGGGcGGagccCGCGGgaugaCGCGGg -3'
miRNA:   3'- -CCG--CGGGGCCCC-CC----GCGCUa----GUGCCg -5'
5418 3' -65.7 NC_001798.1 + 21976 0.67 0.450987
Target:  5'- cGgGCCCCGGGcaGGGCGCcagCGCucGCa -3'
miRNA:   3'- cCgCGGGGCCC--CCCGCGcuaGUGc-CG- -5'
5418 3' -65.7 NC_001798.1 + 22390 0.74 0.17976
Target:  5'- gGGCGgaaCCCCGGcgagccGGGGCGCG---GCGGCg -3'
miRNA:   3'- -CCGC---GGGGCC------CCCCGCGCuagUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 22739 0.67 0.450987
Target:  5'- aGgGCCgCGGGGccgaGGuCGCGAUgGCGGa -3'
miRNA:   3'- cCgCGGgGCCCC----CC-GCGCUAgUGCCg -5'
5418 3' -65.7 NC_001798.1 + 23571 0.69 0.363469
Target:  5'- aGgGCCCCGGGGgcGGCGCc--C-CGGCc -3'
miRNA:   3'- cCgCGGGGCCCC--CCGCGcuaGuGCCG- -5'
5418 3' -65.7 NC_001798.1 + 23718 0.68 0.378485
Target:  5'- gGGCgGCCCCGGcGGGucgagcuggacGC-CGA-CGCGGCc -3'
miRNA:   3'- -CCG-CGGGGCC-CCC-----------CGcGCUaGUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 23819 0.74 0.159887
Target:  5'- cGGCcCCCCGcccccGGGGCGCGugcugUACGGCg -3'
miRNA:   3'- -CCGcGGGGCc----CCCCGCGCua---GUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 23884 0.72 0.21611
Target:  5'- gGGCGCCCgaggCGGaGGaGGCGCGggCcCGGUu -3'
miRNA:   3'- -CCGCGGG----GCC-CC-CCGCGCuaGuGCCG- -5'
5418 3' -65.7 NC_001798.1 + 23927 0.78 0.087457
Target:  5'- gGGCGCCCCGGcgcccguguGGGCGcCGAgCugGGCg -3'
miRNA:   3'- -CCGCGGGGCCc--------CCCGC-GCUaGugCCG- -5'
5418 3' -65.7 NC_001798.1 + 24048 0.66 0.521358
Target:  5'- uGGCGCCCgGGGacguGGCGCugGAcCA-GGCc -3'
miRNA:   3'- -CCGCGGGgCCCc---CCGCG--CUaGUgCCG- -5'
5418 3' -65.7 NC_001798.1 + 24145 0.67 0.4768
Target:  5'- cGUGCCCCaccuGGGGuaCGCcAUgGCGGCg -3'
miRNA:   3'- cCGCGGGG----CCCCccGCGcUAgUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 24283 0.72 0.21611
Target:  5'- cGCGCCCCuGcuGGcGCGCGAgaaCGCGGCg -3'
miRNA:   3'- cCGCGGGGcCc-CC-CGCGCUa--GUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 24460 0.67 0.4768
Target:  5'- cGGCGCCgCGGGGGuGCuCGccgccCugGGg -3'
miRNA:   3'- -CCGCGGgGCCCCC-CGcGCua---GugCCg -5'
5418 3' -65.7 NC_001798.1 + 24550 0.66 0.530469
Target:  5'- cGGCGCCggCGGuGGuGGCGgCGG-C-CGGCg -3'
miRNA:   3'- -CCGCGGg-GCC-CC-CCGC-GCUaGuGCCG- -5'
5418 3' -65.7 NC_001798.1 + 24703 0.73 0.211243
Target:  5'- cGCGCCCCcgcgcccGGGGCccGCGggCGCGGCc -3'
miRNA:   3'- cCGCGGGGcc-----CCCCG--CGCuaGUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 24816 0.66 0.521358
Target:  5'- uGCGCCUgcgCGGGGaccuGCGCGuggCcgGCGGCa -3'
miRNA:   3'- cCGCGGG---GCCCCc---CGCGCua-G--UGCCG- -5'
5418 3' -65.7 NC_001798.1 + 24895 0.68 0.409741
Target:  5'- cGGgGCCCUGGGcccGGCGCugcCGCGGa -3'
miRNA:   3'- -CCgCGGGGCCCc--CCGCGcuaGUGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.