miRNA display CGI


Results 81 - 100 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5418 3' -65.7 NC_001798.1 + 25076 0.68 0.393912
Target:  5'- -cCGCCCCGGccaGGGCGCcgccggGCGGCg -3'
miRNA:   3'- ccGCGGGGCCc--CCCGCGcuag--UGCCG- -5'
5418 3' -65.7 NC_001798.1 + 25333 0.71 0.282258
Target:  5'- uGCGCCCCGcGGGccguGGC-CGAgcUCACGGa -3'
miRNA:   3'- cCGCGGGGC-CCC----CCGcGCU--AGUGCCg -5'
5418 3' -65.7 NC_001798.1 + 25489 0.69 0.356117
Target:  5'- cGCGCCUCGGGcccgcuGCGCcg-CGCGGCg -3'
miRNA:   3'- cCGCGGGGCCCcc----CGCGcuaGUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 25667 0.66 0.493521
Target:  5'- uGGCgGCCCUGGGcaaccggcucugcGGGCcCGc-CACGGCc -3'
miRNA:   3'- -CCG-CGGGGCCC-------------CCCGcGCuaGUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 25728 0.69 0.370925
Target:  5'- cGGCGCCCCcgacgucucGGcgcuGGGCGCG--CAgGGCg -3'
miRNA:   3'- -CCGCGGGG---------CCc---CCCGCGCuaGUgCCG- -5'
5418 3' -65.7 NC_001798.1 + 26188 0.71 0.252918
Target:  5'- cGGCGCUggacggCCGGGccgccgccucGGGCGCGGgcgacgcCAUGGCg -3'
miRNA:   3'- -CCGCGG------GGCCC----------CCCGCGCUa------GUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 26288 0.69 0.370925
Target:  5'- cGCGCgCUGGGgccuGGGCGCGccgCuGCGGCc -3'
miRNA:   3'- cCGCGgGGCCC----CCCGCGCua-G-UGCCG- -5'
5418 3' -65.7 NC_001798.1 + 26354 0.74 0.17156
Target:  5'- cGGCGgCCCGGcGGagcuGCGCGGgcCGCGGCg -3'
miRNA:   3'- -CCGCgGGGCC-CCc---CGCGCUa-GUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 26924 0.66 0.512308
Target:  5'- gGGCGggggUCGGGcGGGCGgGGUCG-GGCg -3'
miRNA:   3'- -CCGCgg--GGCCC-CCCGCgCUAGUgCCG- -5'
5418 3' -65.7 NC_001798.1 + 27204 0.74 0.175617
Target:  5'- gGGCGggggaagcCCCCGGggcGGGGCGCGGgggagGCGGCc -3'
miRNA:   3'- -CCGC--------GGGGCC---CCCCGCGCUag---UGCCG- -5'
5418 3' -65.7 NC_001798.1 + 27278 0.72 0.221073
Target:  5'- uGGCGCgCgGGGGGGaggggcugcCGCGAgcuCGGCg -3'
miRNA:   3'- -CCGCGgGgCCCCCC---------GCGCUaguGCCG- -5'
5418 3' -65.7 NC_001798.1 + 27411 0.66 0.521358
Target:  5'- uGGCGUCuUCGGGGGG-GCGGggagcUugGGa -3'
miRNA:   3'- -CCGCGG-GGCCCCCCgCGCUa----GugCCg -5'
5418 3' -65.7 NC_001798.1 + 27520 0.7 0.28844
Target:  5'- gGGCGCCCgCGGGaaGGCaGCcc-CGCGGCg -3'
miRNA:   3'- -CCGCGGG-GCCCc-CCG-CGcuaGUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 27564 0.74 0.17976
Target:  5'- cGGCGCCCgCGGGGGa-GCGG-C-CGGCu -3'
miRNA:   3'- -CCGCGGG-GCCCCCcgCGCUaGuGCCG- -5'
5418 3' -65.7 NC_001798.1 + 28983 0.7 0.307624
Target:  5'- -cCGCCCCaGGGGGCG-GcgC-CGGCc -3'
miRNA:   3'- ccGCGGGGcCCCCCGCgCuaGuGCCG- -5'
5418 3' -65.7 NC_001798.1 + 29305 0.69 0.370925
Target:  5'- cGCGCCgCCGGGuGGGUGgGcugauCGGCc -3'
miRNA:   3'- cCGCGG-GGCCC-CCCGCgCuagu-GCCG- -5'
5418 3' -65.7 NC_001798.1 + 29411 0.68 0.383838
Target:  5'- cGGgGCgCCGGGGGGaCucccaucugcgucgGCGGgggGCGGCg -3'
miRNA:   3'- -CCgCGgGGCCCCCC-G--------------CGCUag-UGCCG- -5'
5418 3' -65.7 NC_001798.1 + 29897 0.66 0.539638
Target:  5'- --gGCUgCGGGuuGGGgGUGGUCGCGGg -3'
miRNA:   3'- ccgCGGgGCCC--CCCgCGCUAGUGCCg -5'
5418 3' -65.7 NC_001798.1 + 30000 0.66 0.538718
Target:  5'- uGCGCCgccccccgacccuCUGGGGGG-GCGAgggaGGCa -3'
miRNA:   3'- cCGCGG-------------GGCCCCCCgCGCUagugCCG- -5'
5418 3' -65.7 NC_001798.1 + 31139 0.75 0.142018
Target:  5'- aGCGCCCCGgcgcGGGGGCGgCGGU-GCGGg -3'
miRNA:   3'- cCGCGGGGC----CCCCCGC-GCUAgUGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.