miRNA display CGI


Results 1 - 20 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5418 3' -65.7 NC_001798.1 + 154512 0.71 0.263761
Target:  5'- cGCGCCgCGGGgcugccuucccgcGGGCGCccccgCGCGGCu -3'
miRNA:   3'- cCGCGGgGCCC-------------CCCGCGcua--GUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 154381 0.71 0.252918
Target:  5'- gGGUGUuuUuugggGGGGGGCGCGAagGCGGg -3'
miRNA:   3'- -CCGCGggG-----CCCCCCGCGCUagUGCCg -5'
5418 3' -65.7 NC_001798.1 + 154170 0.68 0.415374
Target:  5'- cGGCGUaggCCCGGagccggagcgcgucGGGGCGgGAgaguUCAcuCGGCa -3'
miRNA:   3'- -CCGCG---GGGCC--------------CCCCGCgCU----AGU--GCCG- -5'
5418 3' -65.7 NC_001798.1 + 154128 0.67 0.468113
Target:  5'- cGGCGgggaCCCCGGc-GGCGgGA-CAUGGCg -3'
miRNA:   3'- -CCGC----GGGGCCccCCGCgCUaGUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 154070 0.7 0.314232
Target:  5'- aGCGCC----GGGGCGCGG-CACGGCu -3'
miRNA:   3'- cCGCGGggccCCCCGCGCUaGUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 154044 0.73 0.19271
Target:  5'- aGCGCgCC--GGGGCGCGG-CACGGCu -3'
miRNA:   3'- cCGCGgGGccCCCCGCGCUaGUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 153787 0.72 0.238677
Target:  5'- cGCGCUCCuugcgcggcggcggcGGGGGGCaggcgGCGGcaggCGCGGCg -3'
miRNA:   3'- cCGCGGGG---------------CCCCCCG-----CGCUa---GUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 153059 0.69 0.34173
Target:  5'- cGGCGCCgCCcccugGGGcGGGCG-GA--GCGGCg -3'
miRNA:   3'- -CCGCGG-GG-----CCC-CCCGCgCUagUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 152511 0.71 0.275579
Target:  5'- cGCGCCCCGGcGGGG-GCGGagggagggaaUCccccccucucgggGCGGCc -3'
miRNA:   3'- cCGCGGGGCC-CCCCgCGCU----------AG-------------UGCCG- -5'
5418 3' -65.7 NC_001798.1 + 152032 0.74 0.175617
Target:  5'- -uCGCCCCcccagagggucGGGGGGCG-GcgCACGGCc -3'
miRNA:   3'- ccGCGGGG-----------CCCCCCGCgCuaGUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 151472 0.67 0.442554
Target:  5'- aGCGCa--GGGGcGGgGCGAUCucguccgugcacACGGCa -3'
miRNA:   3'- cCGCGgggCCCC-CCgCGCUAG------------UGCCG- -5'
5418 3' -65.7 NC_001798.1 + 151166 0.69 0.370925
Target:  5'- cGgGCCaCgGGGGGGUggGCGA-CAgGGCg -3'
miRNA:   3'- cCgCGG-GgCCCCCCG--CGCUaGUgCCG- -5'
5418 3' -65.7 NC_001798.1 + 150917 0.68 0.401777
Target:  5'- gGGCGCUcuUCGGGGGGCggGCGGgacguagucCACuGCa -3'
miRNA:   3'- -CCGCGG--GGCCCCCCG--CGCUa--------GUGcCG- -5'
5418 3' -65.7 NC_001798.1 + 150838 0.8 0.070017
Target:  5'- gGGCGCCa--GGGGGCGCcggucgGGUCGCGGCg -3'
miRNA:   3'- -CCGCGGggcCCCCCGCG------CUAGUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 150642 0.66 0.515016
Target:  5'- gGGCuGUCUcgCGGGGGGCGUccugcccuccgccgcCGCGGCg -3'
miRNA:   3'- -CCG-CGGG--GCCCCCCGCGcua------------GUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 150569 0.85 0.029045
Target:  5'- cGGgGCCCgCGGGGcGGCGCGGagACGGCg -3'
miRNA:   3'- -CCgCGGG-GCCCC-CCGCGCUagUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 150458 0.68 0.386148
Target:  5'- gGGCgacgGCCgCGcGGGGGCGC----GCGGCg -3'
miRNA:   3'- -CCG----CGGgGC-CCCCCGCGcuagUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 150338 0.74 0.175208
Target:  5'- uGCGCgaCCGGGGcGCGCGGUgcgcguccaccggCACGGCg -3'
miRNA:   3'- cCGCGg-GGCCCCcCGCGCUA-------------GUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 150158 0.67 0.454385
Target:  5'- cGCGCCUCuuccGGGGGCGgGccgccgcccccucCGCGGCg -3'
miRNA:   3'- cCGCGGGGc---CCCCCGCgCua-----------GUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 150071 0.71 0.276181
Target:  5'- uGGCccccaccCCCUGGGGGGCgagggGCGAgcgCGgGGCg -3'
miRNA:   3'- -CCGc------GGGGCCCCCCG-----CGCUa--GUgCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.