miRNA display CGI


Results 21 - 40 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5418 3' -65.7 NC_001798.1 + 149987 0.71 0.264342
Target:  5'- cGGCGCCCgCGGacgccGGGGCGa----GCGGCc -3'
miRNA:   3'- -CCGCGGG-GCC-----CCCCGCgcuagUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 149675 0.66 0.512308
Target:  5'- cGgGCCCCGGgcucGGGGCcGCccUCGCguGGCg -3'
miRNA:   3'- cCgCGGGGCC----CCCCG-CGcuAGUG--CCG- -5'
5418 3' -65.7 NC_001798.1 + 149272 0.68 0.416992
Target:  5'- cGCGCCCUGcucccgagaccacGGGuGGCGCGAcCGgaGGCc -3'
miRNA:   3'- cCGCGGGGC-------------CCC-CCGCGCUaGUg-CCG- -5'
5418 3' -65.7 NC_001798.1 + 149238 0.68 0.401777
Target:  5'- cGUGgCCCGcGGGGGCGuCGccggC-CGGCg -3'
miRNA:   3'- cCGCgGGGC-CCCCCGC-GCua--GuGCCG- -5'
5418 3' -65.7 NC_001798.1 + 149162 0.69 0.362729
Target:  5'- aGGCGCCUCGGccggugguccgguGGGGgGCGGcuuccuUCG-GGCa -3'
miRNA:   3'- -CCGCGGGGCC-------------CCCCgCGCU------AGUgCCG- -5'
5418 3' -65.7 NC_001798.1 + 148420 0.69 0.363469
Target:  5'- gGGCG-CCgGGGcGGGgGUGggCACGGg -3'
miRNA:   3'- -CCGCgGGgCCC-CCCgCGCuaGUGCCg -5'
5418 3' -65.7 NC_001798.1 + 147499 0.66 0.503324
Target:  5'- --gGCUCCGGGGGGgGgGggCGCcuGCg -3'
miRNA:   3'- ccgCGGGGCCCCCCgCgCuaGUGc-CG- -5'
5418 3' -65.7 NC_001798.1 + 147238 0.74 0.17976
Target:  5'- gGGgGCCCCGGGgccccGGGcCGCGccgGCGGCg -3'
miRNA:   3'- -CCgCGGGGCCC-----CCC-GCGCuagUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 147049 0.68 0.393912
Target:  5'- uGCGCCCCGGccggaGGGGCccccgcaccucgGCGGccgcccccUC-CGGCg -3'
miRNA:   3'- cCGCGGGGCC-----CCCCG------------CGCU--------AGuGCCG- -5'
5418 3' -65.7 NC_001798.1 + 146104 0.68 0.42596
Target:  5'- gGGCGaaggaaGGGGGG-GUGGUgGCGGCg -3'
miRNA:   3'- -CCGCgggg--CCCCCCgCGCUAgUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 146033 0.69 0.370925
Target:  5'- aGGCGCggUGGGGGGCGUGG---UGGUg -3'
miRNA:   3'- -CCGCGggGCCCCCCGCGCUaguGCCG- -5'
5418 3' -65.7 NC_001798.1 + 145906 0.75 0.148935
Target:  5'- cGCGCCCCacc-GGCGgGAUCGCGGCg -3'
miRNA:   3'- cCGCGGGGccccCCGCgCUAGUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 143789 0.69 0.373937
Target:  5'- gGGCGCCCCagagcauaaagaccaGGcccGGGCG-GcgCGCGGCc -3'
miRNA:   3'- -CCGCGGGG---------------CCc--CCCGCgCuaGUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 143644 0.7 0.327767
Target:  5'- cGGCauaauGUCCCGGGuuucgaGGuaGCGAuUCGCGGCg -3'
miRNA:   3'- -CCG-----CGGGGCCC------CCcgCGCU-AGUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 142486 0.67 0.434211
Target:  5'- cGGC-CCCCGaggcggcgcGGGGGUGCGAUaAC-GCa -3'
miRNA:   3'- -CCGcGGGGC---------CCCCCGCGCUAgUGcCG- -5'
5418 3' -65.7 NC_001798.1 + 139363 0.66 0.530469
Target:  5'- cGGCGUCCgGcGGGGaGgGC--UCGCGGg -3'
miRNA:   3'- -CCGCGGGgC-CCCC-CgCGcuAGUGCCg -5'
5418 3' -65.7 NC_001798.1 + 138713 0.73 0.188305
Target:  5'- cGGCcagaucagaaGCCCCGGGccGGCGCGcucCGCGGCc -3'
miRNA:   3'- -CCG----------CGGGGCCCc-CCGCGCua-GUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 138492 0.66 0.485566
Target:  5'- cGCGUguuCCCGGaGGGCGUGGcacgcgacgaucUCGgGGCa -3'
miRNA:   3'- cCGCG---GGGCCcCCCGCGCU------------AGUgCCG- -5'
5418 3' -65.7 NC_001798.1 + 138191 0.74 0.171159
Target:  5'- cGGUGCCgCCcuugccgaacccaGGGaGGGUGUGGUCgACGGCg -3'
miRNA:   3'- -CCGCGG-GG-------------CCC-CCCGCGCUAG-UGCCG- -5'
5418 3' -65.7 NC_001798.1 + 138157 0.82 0.04694
Target:  5'- cGCGCCCCcggguccuGGGGGCGCGAccCGCGGCc -3'
miRNA:   3'- cCGCGGGGc-------CCCCCGCGCUa-GUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.