miRNA display CGI


Results 41 - 60 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5418 3' -65.7 NC_001798.1 + 137977 0.68 0.378485
Target:  5'- aGCGCCCCcGccuGGGCGCGccgcagcUCGCGGUc -3'
miRNA:   3'- cCGCGGGGcCc--CCCGCGCu------AGUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 137632 0.79 0.073578
Target:  5'- cGCGCCCgcuCGGGGGGCGCGAagCACGu- -3'
miRNA:   3'- cCGCGGG---GCCCCCCGCGCUa-GUGCcg -5'
5418 3' -65.7 NC_001798.1 + 137441 0.68 0.409741
Target:  5'- -cCGCCCCGcGGGGaCGCGcUCGCccggaaaucGGCg -3'
miRNA:   3'- ccGCGGGGCcCCCC-GCGCuAGUG---------CCG- -5'
5418 3' -65.7 NC_001798.1 + 137143 0.68 0.393912
Target:  5'- cGCcCCCUGGGGGugacgucaacGCGCaggacgcuGGUCGCGGUa -3'
miRNA:   3'- cCGcGGGGCCCCC----------CGCG--------CUAGUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 135487 0.68 0.378485
Target:  5'- uGGa-CCCCGGGGacgcGGaCGcCGcgCACGGCg -3'
miRNA:   3'- -CCgcGGGGCCCC----CC-GC-GCuaGUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 135362 0.71 0.258579
Target:  5'- cGCGCUCCGGcagcugcucGGCGgGGUCAUGGCc -3'
miRNA:   3'- cCGCGGGGCCcc-------CCGCgCUAGUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 134938 0.69 0.34173
Target:  5'- cGGCGCgugaCCUGGugcGGGGCGC---CGCGGCc -3'
miRNA:   3'- -CCGCG----GGGCC---CCCCGCGcuaGUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 134156 0.66 0.539638
Target:  5'- cGGC-CCCC--GGGGC-CG-UCGCGGCc -3'
miRNA:   3'- -CCGcGGGGccCCCCGcGCuAGUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 134069 0.68 0.386148
Target:  5'- -aCGCCgCGGGGgaGGCGCGcgCGCGcuucGCg -3'
miRNA:   3'- ccGCGGgGCCCC--CCGCGCuaGUGC----CG- -5'
5418 3' -65.7 NC_001798.1 + 133754 0.7 0.307624
Target:  5'- cGCGCCCgCGuGGGGGCGCugcuuGcgCAC-GCa -3'
miRNA:   3'- cCGCGGG-GC-CCCCCGCG-----CuaGUGcCG- -5'
5418 3' -65.7 NC_001798.1 + 132141 0.73 0.211243
Target:  5'- uGCGCCgCCGGGGGcCgGCGggCGgGGCg -3'
miRNA:   3'- cCGCGG-GGCCCCCcG-CGCuaGUgCCG- -5'
5418 3' -65.7 NC_001798.1 + 131340 0.74 0.159887
Target:  5'- cGCGCCCCGGGcgcgacgucGGCGCccggCGCGGCc -3'
miRNA:   3'- cCGCGGGGCCCc--------CCGCGcua-GUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 129043 0.67 0.450987
Target:  5'- -cCGCCCCGGaucGGGCGCuGGUggaguuaaauaGCGGCg -3'
miRNA:   3'- ccGCGGGGCCc--CCCGCG-CUAg----------UGCCG- -5'
5418 3' -65.7 NC_001798.1 + 126712 0.67 0.468113
Target:  5'- cGCGaCCCUgcucguGGGGGaGUGCGcucuucgCGCGGCc -3'
miRNA:   3'- cCGC-GGGG------CCCCC-CGCGCua-----GUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 124869 0.67 0.46294
Target:  5'- uGGCGCCU-GGGGacuagaaacacgguGGCGCGcuggcggaagugccgCACGGCc -3'
miRNA:   3'- -CCGCGGGgCCCC--------------CCGCGCua-------------GUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 123519 0.66 0.485566
Target:  5'- uGGCGCgucgUUCGGGGGGa-CGA--GCGGCu -3'
miRNA:   3'- -CCGCG----GGGCCCCCCgcGCUagUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 122810 0.69 0.334695
Target:  5'- uGGCGCaUCUGGGcGGCcaggGCGGUCggggGCGGCg -3'
miRNA:   3'- -CCGCG-GGGCCCcCCG----CGCUAG----UGCCG- -5'
5418 3' -65.7 NC_001798.1 + 121861 0.68 0.378485
Target:  5'- --gGCCCCGGGaGGCGa---CACGGCc -3'
miRNA:   3'- ccgCGGGGCCCcCCGCgcuaGUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 120394 0.66 0.539638
Target:  5'- gGGCGaugUCCGcGGGGGC-CGAUCccgugaGCGcGCg -3'
miRNA:   3'- -CCGCg--GGGC-CCCCCGcGCUAG------UGC-CG- -5'
5418 3' -65.7 NC_001798.1 + 120343 0.68 0.386148
Target:  5'- -aCGCCCCGGGGuGCaGCGccagcacCugGGCg -3'
miRNA:   3'- ccGCGGGGCCCCcCG-CGCua-----GugCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.