miRNA display CGI


Results 61 - 80 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5418 3' -65.7 NC_001798.1 + 119422 0.66 0.485566
Target:  5'- uGGCccugGCCCCGGcgguucGGGUGUGuacguUCgACGGCg -3'
miRNA:   3'- -CCG----CGGGGCCc-----CCCGCGCu----AG-UGCCG- -5'
5418 3' -65.7 NC_001798.1 + 118536 0.67 0.442554
Target:  5'- cGGUGUCUCGcGGcccGGCGCcauGAUCACGGa -3'
miRNA:   3'- -CCGCGGGGC-CCc--CCGCG---CUAGUGCCg -5'
5418 3' -65.7 NC_001798.1 + 118295 0.66 0.500642
Target:  5'- -cCGCCCCccccaGGGGGGCuuggacugggagccGCGAUUccgAgGGCa -3'
miRNA:   3'- ccGCGGGG-----CCCCCCG--------------CGCUAG---UgCCG- -5'
5418 3' -65.7 NC_001798.1 + 115753 0.69 0.359045
Target:  5'- cGGcCGgUCCGGGGgcauccaggccaccuGGCGCGugGUCaACGGCa -3'
miRNA:   3'- -CC-GCgGGGCCCC---------------CCGCGC--UAG-UGCCG- -5'
5418 3' -65.7 NC_001798.1 + 114569 0.77 0.106105
Target:  5'- aGGcCGUCCUGGGGGcguuugaGCGCGG-CACGGCc -3'
miRNA:   3'- -CC-GCGGGGCCCCC-------CGCGCUaGUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 113471 0.7 0.301123
Target:  5'- cGUGUUuuGGGGGuuguGCGUGAUCauggGCGGCg -3'
miRNA:   3'- cCGCGGggCCCCC----CGCGCUAG----UGCCG- -5'
5418 3' -65.7 NC_001798.1 + 111822 0.71 0.27021
Target:  5'- gGGCGUCCaGGGGcuGGCGCGGg-GCGGg -3'
miRNA:   3'- -CCGCGGGgCCCC--CCGCGCUagUGCCg -5'
5418 3' -65.7 NC_001798.1 + 111754 0.66 0.539638
Target:  5'- cGGCcccgGUCCCGGccaucgguugGGGGCGCGGgugcccgugaUCACGa- -3'
miRNA:   3'- -CCG----CGGGGCC----------CCCCGCGCU----------AGUGCcg -5'
5418 3' -65.7 NC_001798.1 + 111649 0.67 0.442554
Target:  5'- gGGCGCUCgGcGGGGGgGCGGaagagacgcUCGgGGa -3'
miRNA:   3'- -CCGCGGGgC-CCCCCgCGCU---------AGUgCCg -5'
5418 3' -65.7 NC_001798.1 + 111594 0.69 0.346718
Target:  5'- gGGgGgCCCGGcGGGGCGgccuccuggagcccCGGggGCGGCa -3'
miRNA:   3'- -CCgCgGGGCC-CCCCGC--------------GCUagUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 109685 0.68 0.386148
Target:  5'- gGGCGCCguuCCuGGcGGGCGCGcccuCGGCc -3'
miRNA:   3'- -CCGCGG---GGcCC-CCCGCGCuaguGCCG- -5'
5418 3' -65.7 NC_001798.1 + 109544 0.68 0.378485
Target:  5'- uGGacaGCCCCGcGGccuauGGCGCGGUggccccgagCGCGGCc -3'
miRNA:   3'- -CCg--CGGGGC-CCc----CCGCGCUA---------GUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 109457 0.66 0.485566
Target:  5'- cGCGCCUCGGGcaucugguGGcCGCGAUCcuCGaGCg -3'
miRNA:   3'- cCGCGGGGCCCc-------CC-GCGCUAGu-GC-CG- -5'
5418 3' -65.7 NC_001798.1 + 109367 0.7 0.320946
Target:  5'- uGGC-CgCCCGGGGaGCaGCGGgcugCGCGGCc -3'
miRNA:   3'- -CCGcG-GGGCCCCcCG-CGCUa---GUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 109243 0.66 0.485566
Target:  5'- uGGCGCCUCGcGGGGCuGCucgccucGUCGgGGUu -3'
miRNA:   3'- -CCGCGGGGCcCCCCG-CGc------UAGUgCCG- -5'
5418 3' -65.7 NC_001798.1 + 108303 0.66 0.503324
Target:  5'- uGGCGCCCCc--GGGCGaacucaaccUGAcUACGGCa -3'
miRNA:   3'- -CCGCGGGGcccCCCGC---------GCUaGUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 106105 0.66 0.493521
Target:  5'- cGGCGCCgcgaccgCCGGGucugcGGUuccgGCGG-CACGGCa -3'
miRNA:   3'- -CCGCGG-------GGCCCc----CCG----CGCUaGUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 106060 0.72 0.231291
Target:  5'- cGUGUCggggaGGGGGGCcuuugcggucugGCGGUCGCGGCg -3'
miRNA:   3'- cCGCGGgg---CCCCCCG------------CGCUAGUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 105383 0.66 0.503324
Target:  5'- cGGCGgCCUGGaGGGCGgCGuUCuccagggccgccGCGGCc -3'
miRNA:   3'- -CCGCgGGGCCcCCCGC-GCuAG------------UGCCG- -5'
5418 3' -65.7 NC_001798.1 + 104791 0.66 0.539638
Target:  5'- aGGCGggccagcagguCCCCGaacgcaacGGGaGCGCGAUCGCGa- -3'
miRNA:   3'- -CCGC-----------GGGGCc-------CCC-CGCGCUAGUGCcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.