miRNA display CGI


Results 81 - 100 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5418 3' -65.7 NC_001798.1 + 104507 0.66 0.530469
Target:  5'- cGUGCCaaaaacgCGGcGGcGGCGCGGuugacgucgUCGCGGUg -3'
miRNA:   3'- cCGCGGg------GCC-CC-CCGCGCU---------AGUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 103376 0.66 0.539638
Target:  5'- cGGC-CCCCGaGGGuCGuUGAcCACGGCg -3'
miRNA:   3'- -CCGcGGGGCcCCCcGC-GCUaGUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 103268 0.66 0.512308
Target:  5'- -aCGCuccuCCCGGGaGaGCGCGGgucCGCGGCg -3'
miRNA:   3'- ccGCG----GGGCCCcC-CGCGCUa--GUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 103143 0.68 0.429249
Target:  5'- aGGCGCCgCCcgauggcgcacaGGGccacgugcgcaaacaGGGUGCGGUCG-GGCg -3'
miRNA:   3'- -CCGCGG-GG------------CCC---------------CCCGCGCUAGUgCCG- -5'
5418 3' -65.7 NC_001798.1 + 103012 0.66 0.521358
Target:  5'- aGGUGCgCCCGGccaGCGCGAgcuCGGCc -3'
miRNA:   3'- -CCGCG-GGGCCcccCGCGCUaguGCCG- -5'
5418 3' -65.7 NC_001798.1 + 102209 0.79 0.075423
Target:  5'- cGGCGCgCCGGGagucgaccGGGCGCGGcUCGgGGCg -3'
miRNA:   3'- -CCGCGgGGCCC--------CCCGCGCU-AGUgCCG- -5'
5418 3' -65.7 NC_001798.1 + 102087 0.69 0.363469
Target:  5'- cGGCGgauacggCCCGuaGGGGGCGUGggUACGcGCg -3'
miRNA:   3'- -CCGCg------GGGC--CCCCCGCGCuaGUGC-CG- -5'
5418 3' -65.7 NC_001798.1 + 101973 0.82 0.04694
Target:  5'- aGGagGCCCCGGGGGG-GCGAUgUGCGGCg -3'
miRNA:   3'- -CCg-CGGGGCCCCCCgCGCUA-GUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 101811 0.75 0.148935
Target:  5'- gGGCGCCUCGGguuGGGGUaaGcUCGCGGCg -3'
miRNA:   3'- -CCGCGGGGCC---CCCCGcgCuAGUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 100846 0.68 0.421054
Target:  5'- gGGCGCUugCCGuGGGGCugcugguccuggccgGCcuGGUCGCGGCc -3'
miRNA:   3'- -CCGCGG--GGCcCCCCG---------------CG--CUAGUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 98919 0.67 0.46294
Target:  5'- cGCG-CCCGGaGGGGCagaacuacacggaggGC-AUCGCGGUg -3'
miRNA:   3'- cCGCgGGGCC-CCCCG---------------CGcUAGUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 98622 0.8 0.070017
Target:  5'- cGCGCCUCGGGcGGCGUGGccgcgaccgUCGCGGCg -3'
miRNA:   3'- cCGCGGGGCCCcCCGCGCU---------AGUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 98555 0.7 0.294729
Target:  5'- cGCGCUggUCGuGGGGGCGCuGGUggcCGCGGUg -3'
miRNA:   3'- cCGCGG--GGC-CCCCCGCG-CUA---GUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 97835 0.79 0.071776
Target:  5'- uGCGCCCUGacGGcGGGCGCGggCACGGUc -3'
miRNA:   3'- cCGCGGGGC--CC-CCCGCGCuaGUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 97507 0.66 0.489094
Target:  5'- aGGaagaGCCCCGggccgccgcggaggaGGGGGgGCGGaggCGUGGCg -3'
miRNA:   3'- -CCg---CGGGGC---------------CCCCCgCGCUa--GUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 96973 0.66 0.494409
Target:  5'- uGGCGCggaCCGcGGcGGGCGgCGGggcCAgGGCc -3'
miRNA:   3'- -CCGCGg--GGC-CC-CCCGC-GCUa--GUgCCG- -5'
5418 3' -65.7 NC_001798.1 + 95705 0.68 0.409741
Target:  5'- cGGCGUcgCCCGaaaGcGGGCGUu-UCACGGCg -3'
miRNA:   3'- -CCGCG--GGGCc--C-CCCGCGcuAGUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 95609 0.75 0.135396
Target:  5'- cGGCGCCgCCGGGGaGGUGUuuaacuuugggGAUUuCGGCg -3'
miRNA:   3'- -CCGCGG-GGCCCC-CCGCG-----------CUAGuGCCG- -5'
5418 3' -65.7 NC_001798.1 + 95523 0.72 0.21611
Target:  5'- cGCGCCCUGGa--GCGCGggCAUGGCg -3'
miRNA:   3'- cCGCGGGGCCcccCGCGCuaGUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 95001 0.66 0.494409
Target:  5'- uGgGCCCCGcaGGGcGGCGCGggCcuggaGGCc -3'
miRNA:   3'- cCgCGGGGC--CCC-CCGCGCuaGug---CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.