miRNA display CGI


Results 81 - 100 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5418 3' -65.7 NC_001798.1 + 118295 0.66 0.500642
Target:  5'- -cCGCCCCccccaGGGGGGCuuggacugggagccGCGAUUccgAgGGCa -3'
miRNA:   3'- ccGCGGGG-----CCCCCCG--------------CGCUAG---UgCCG- -5'
5418 3' -65.7 NC_001798.1 + 91952 0.66 0.494409
Target:  5'- uGCccaaCCCCGGGcccccccguccGGCGCGAUC-CGGUg -3'
miRNA:   3'- cCGc---GGGGCCCc----------CCGCGCUAGuGCCG- -5'
5418 3' -65.7 NC_001798.1 + 95001 0.66 0.494409
Target:  5'- uGgGCCCCGcaGGGcGGCGCGggCcuggaGGCc -3'
miRNA:   3'- cCgCGGGGC--CCC-CCGCGCuaGug---CCG- -5'
5418 3' -65.7 NC_001798.1 + 79376 0.66 0.494409
Target:  5'- cGGCGgCCagacGGGCGCGggCGCGGa -3'
miRNA:   3'- -CCGCgGGgcccCCCGCGCuaGUGCCg -5'
5418 3' -65.7 NC_001798.1 + 16174 0.66 0.494409
Target:  5'- gGGCgGCCCgCGGGGaccGGgGgGAcgCACGGg -3'
miRNA:   3'- -CCG-CGGG-GCCCC---CCgCgCUa-GUGCCg -5'
5418 3' -65.7 NC_001798.1 + 96973 0.66 0.494409
Target:  5'- uGGCGCggaCCGcGGcGGGCGgCGGggcCAgGGCc -3'
miRNA:   3'- -CCGCGg--GGC-CC-CCCGC-GCUa--GUgCCG- -5'
5418 3' -65.7 NC_001798.1 + 74391 0.66 0.494409
Target:  5'- -cCGgCCCGGGGGcCGUGG-CGcCGGCg -3'
miRNA:   3'- ccGCgGGGCCCCCcGCGCUaGU-GCCG- -5'
5418 3' -65.7 NC_001798.1 + 105383 0.66 0.503324
Target:  5'- cGGCGgCCUGGaGGGCGgCGuUCuccagggccgccGCGGCc -3'
miRNA:   3'- -CCGCgGGGCCcCCCGC-GCuAG------------UGCCG- -5'
5418 3' -65.7 NC_001798.1 + 108303 0.66 0.503324
Target:  5'- uGGCGCCCCc--GGGCGaacucaaccUGAcUACGGCa -3'
miRNA:   3'- -CCGCGGGGcccCCCGC---------GCUaGUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 48153 0.66 0.503324
Target:  5'- uGCGCCgCGGucGGGCGCc-UgGCGGCc -3'
miRNA:   3'- cCGCGGgGCCc-CCCGCGcuAgUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 34014 0.66 0.51592
Target:  5'- cGCGCCCacgcgguagaggaaGGGgacGGGCGCcacaccCACGGCu -3'
miRNA:   3'- cCGCGGGg-------------CCC---CCCGCGcua---GUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 150642 0.66 0.515016
Target:  5'- gGGCuGUCUcgCGGGGGGCGUccugcccuccgccgcCGCGGCg -3'
miRNA:   3'- -CCG-CGGG--GCCCCCCGCGcua------------GUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 149675 0.66 0.512308
Target:  5'- cGgGCCCCGGgcucGGGGCcGCccUCGCguGGCg -3'
miRNA:   3'- cCgCGGGGCC----CCCCG-CGcuAGUG--CCG- -5'
5418 3' -65.7 NC_001798.1 + 103268 0.66 0.512308
Target:  5'- -aCGCuccuCCCGGGaGaGCGCGGgucCGCGGCg -3'
miRNA:   3'- ccGCG----GGGCCCcC-CGCGCUa--GUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 9100 0.66 0.512308
Target:  5'- gGGCcacgggaaagGCCgCGGGGGaGCcgccgcgagGUGGUCuGCGGCa -3'
miRNA:   3'- -CCG----------CGGgGCCCCC-CG---------CGCUAG-UGCCG- -5'
5418 3' -65.7 NC_001798.1 + 26924 0.66 0.512308
Target:  5'- gGGCGggggUCGGGcGGGCGgGGUCG-GGCg -3'
miRNA:   3'- -CCGCgg--GGCCC-CCCGCgCUAGUgCCG- -5'
5418 3' -65.7 NC_001798.1 + 21805 0.66 0.512308
Target:  5'- gGGCccGCCUCGGGGcGGagccCGCGGgaugaCGCGGg -3'
miRNA:   3'- -CCG--CGGGGCCCC-CC----GCGCUa----GUGCCg -5'
5418 3' -65.7 NC_001798.1 + 40816 0.66 0.512308
Target:  5'- aGCGCCCCcuGGGGGCcgcugguuccGCGuuUUugGGg -3'
miRNA:   3'- cCGCGGGGc-CCCCCG----------CGCu-AGugCCg -5'
5418 3' -65.7 NC_001798.1 + 2214 0.66 0.506909
Target:  5'- cGGCGCagCGGGcccgaggcgcgcagcGGGC-CGAagGCGGCg -3'
miRNA:   3'- -CCGCGggGCCC---------------CCCGcGCUagUGCCG- -5'
5418 3' -65.7 NC_001798.1 + 78852 0.66 0.503324
Target:  5'- cGGCacgccgGCCgCCuGGGGGCGCucuuuGAUacuCGGCg -3'
miRNA:   3'- -CCG------CGG-GGcCCCCCGCG-----CUAgu-GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.