miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5418 5' -51.2 NC_001798.1 + 34796 0.66 0.993516
Target:  5'- gCCGGCGcggcccggggccccgGGgcccCcGCGCUCCGCCGGGg -3'
miRNA:   3'- -GGUUGCa--------------CUaa--GaCGUGAGGUGGCUC- -5'
5418 5' -51.2 NC_001798.1 + 102313 0.66 0.992426
Target:  5'- uCCAccuCGUGucggCgGCGCUUCGCCGAc -3'
miRNA:   3'- -GGUu--GCACuaa-GaCGUGAGGUGGCUc -5'
5418 5' -51.2 NC_001798.1 + 77771 0.66 0.990074
Target:  5'- uUCGACGUGGUcgagCUGCGCcgCCugCa-- -3'
miRNA:   3'- -GGUUGCACUAa---GACGUGa-GGugGcuc -5'
5418 5' -51.2 NC_001798.1 + 81034 0.67 0.988702
Target:  5'- cCUGACGUGcgGUUUguggGCAgCgaggCCACCGAGg -3'
miRNA:   3'- -GGUUGCAC--UAAGa---CGU-Ga---GGUGGCUC- -5'
5418 5' -51.2 NC_001798.1 + 102976 0.67 0.988702
Target:  5'- gCAGCGUGugugUgaGCGcCUCCacGCCGGGg -3'
miRNA:   3'- gGUUGCACua--AgaCGU-GAGG--UGGCUC- -5'
5418 5' -51.2 NC_001798.1 + 70448 0.67 0.983689
Target:  5'- gCAugGcGGUg--GCGCUCC-CCGAGa -3'
miRNA:   3'- gGUugCaCUAagaCGUGAGGuGGCUC- -5'
5418 5' -51.2 NC_001798.1 + 74369 0.67 0.981691
Target:  5'- gCCAugGUGuuuuUUgUGCcCUCCGgcCCGGGg -3'
miRNA:   3'- -GGUugCACu---AAgACGuGAGGU--GGCUC- -5'
5418 5' -51.2 NC_001798.1 + 105322 0.68 0.977151
Target:  5'- gCGAUGUGAUgcacCUGCuGCUCgAUCGGGc -3'
miRNA:   3'- gGUUGCACUAa---GACG-UGAGgUGGCUC- -5'
5418 5' -51.2 NC_001798.1 + 117976 0.69 0.950652
Target:  5'- gCGACGUGcaguUUaaGCGC-CCGCCGGGg -3'
miRNA:   3'- gGUUGCACu---AAgaCGUGaGGUGGCUC- -5'
5418 5' -51.2 NC_001798.1 + 73892 0.7 0.926426
Target:  5'- uUCGACGUGGggCcccgcgacgUGCugUCCGCgGAGg -3'
miRNA:   3'- -GGUUGCACUaaG---------ACGugAGGUGgCUC- -5'
5418 5' -51.2 NC_001798.1 + 135651 0.71 0.914989
Target:  5'- aCCGggGCGUGGUUCUGgaACUCCcgcgaugacACCGAc -3'
miRNA:   3'- -GGU--UGCACUAAGACg-UGAGG---------UGGCUc -5'
5418 5' -51.2 NC_001798.1 + 36369 0.71 0.901909
Target:  5'- gCCAcCGUGuguucgucuguguGUUCUGCGCggCGCCGGGg -3'
miRNA:   3'- -GGUuGCAC-------------UAAGACGUGagGUGGCUC- -5'
5418 5' -51.2 NC_001798.1 + 151585 0.72 0.889146
Target:  5'- gCgGGCGUGGggCUGCccuggcGCUCgGCCGGGg -3'
miRNA:   3'- -GgUUGCACUaaGACG------UGAGgUGGCUC- -5'
5418 5' -51.2 NC_001798.1 + 25761 0.73 0.835024
Target:  5'- -gGGCGUGcugCUGCugUCCACgCGGGa -3'
miRNA:   3'- ggUUGCACuaaGACGugAGGUG-GCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.