miRNA display CGI


Results 21 - 40 of 277 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5419 3' -68.2 NC_001798.1 + 98286 0.66 0.42508
Target:  5'- uGCGCCGCCCcGACuGcaGCC-GCCCGa -3'
miRNA:   3'- -CGCGGCGGGcCUGcCccUGGcCGGGC- -5'
5419 3' -68.2 NC_001798.1 + 135006 0.66 0.42508
Target:  5'- gGCGCCagggucguccuGCCCccGCGGGcauGGCCGGCCg- -3'
miRNA:   3'- -CGCGG-----------CGGGccUGCCC---CUGGCCGGgc -5'
5419 3' -68.2 NC_001798.1 + 29936 0.66 0.42508
Target:  5'- gGCGggaCGCuuG-ACGGGGccgacccCCGGCCCGc -3'
miRNA:   3'- -CGCg--GCGggCcUGCCCCu------GGCCGGGC- -5'
5419 3' -68.2 NC_001798.1 + 53910 0.66 0.424277
Target:  5'- cGCGCCaCCUGGACcGcGGGCCcagcggcaccacgGGCUCGa -3'
miRNA:   3'- -CGCGGcGGGCCUGcC-CCUGG-------------CCGGGC- -5'
5419 3' -68.2 NC_001798.1 + 6230 0.66 0.420272
Target:  5'- gGgGCCGgCCggggggacgggcgggGGACGGGGGgaCGGgCCGg -3'
miRNA:   3'- -CgCGGCgGG---------------CCUGCCCCUg-GCCgGGC- -5'
5419 3' -68.2 NC_001798.1 + 51686 0.66 0.417085
Target:  5'- aCGCUGCagcaGGGCGaGGcGCUGGCCUGg -3'
miRNA:   3'- cGCGGCGgg--CCUGC-CCcUGGCCGGGC- -5'
5419 3' -68.2 NC_001798.1 + 112548 0.66 0.417085
Target:  5'- cGUGCCGCCCGcGCGuaGGGuugUGGCCgGa -3'
miRNA:   3'- -CGCGGCGGGCcUGC--CCCug-GCCGGgC- -5'
5419 3' -68.2 NC_001798.1 + 146624 0.66 0.417085
Target:  5'- cCGCCGCauuaGGcccccGCGGGcauccggcGGCCGGCCCc -3'
miRNA:   3'- cGCGGCGgg--CC-----UGCCC--------CUGGCCGGGc -5'
5419 3' -68.2 NC_001798.1 + 23773 0.66 0.417085
Target:  5'- cGCGCuacCGCgaCGGguacgucaGCGGGGAgCCguGGCCCGg -3'
miRNA:   3'- -CGCG---GCGg-GCC--------UGCCCCU-GG--CCGGGC- -5'
5419 3' -68.2 NC_001798.1 + 47954 0.66 0.41629
Target:  5'- gGCGaccgaccCCGCCCGcGGCaGGcGACCcGCCCa -3'
miRNA:   3'- -CGC-------GGCGGGC-CUGcCC-CUGGcCGGGc -5'
5419 3' -68.2 NC_001798.1 + 22996 0.66 0.414704
Target:  5'- -aGCCuGCCgCGGACGGcgucgucucgccgcGGcaGCUGGCCCu -3'
miRNA:   3'- cgCGG-CGG-GCCUGCC--------------CC--UGGCCGGGc -5'
5419 3' -68.2 NC_001798.1 + 87165 0.66 0.414704
Target:  5'- gGCuGCUGCCCcgcgugcagcgcggGcGACGGGcGGCUGGCCa- -3'
miRNA:   3'- -CG-CGGCGGG--------------C-CUGCCC-CUGGCCGGgc -5'
5419 3' -68.2 NC_001798.1 + 30000 0.66 0.412332
Target:  5'- uGCGCCGCCCcccgacccucuggggGGGCGaGGGagGCagggagGaGCCCGa -3'
miRNA:   3'- -CGCGGCGGG---------------CCUGC-CCC--UGg-----C-CGGGC- -5'
5419 3' -68.2 NC_001798.1 + 62440 0.66 0.409181
Target:  5'- -aGCC-CCCGGAcgucgcCGGuGGGCCGcgcgacggcGCCCGg -3'
miRNA:   3'- cgCGGcGGGCCU------GCC-CCUGGC---------CGGGC- -5'
5419 3' -68.2 NC_001798.1 + 23505 0.66 0.409181
Target:  5'- aGCGCCgcagaccacGCCgCGGGC-GGGACCcucGGCgCGg -3'
miRNA:   3'- -CGCGG---------CGG-GCCUGcCCCUGG---CCGgGC- -5'
5419 3' -68.2 NC_001798.1 + 121684 0.66 0.409181
Target:  5'- aCGUCGCgCGGcUGGGGGCCgcGGCUCn -3'
miRNA:   3'- cGCGGCGgGCCuGCCCCUGG--CCGGGc -5'
5419 3' -68.2 NC_001798.1 + 134308 0.66 0.409181
Target:  5'- cCGCugCGCCUGGGCuGGGACCcgcagacgGGUCUGg -3'
miRNA:   3'- cGCG--GCGGGCCUGcCCCUGG--------CCGGGC- -5'
5419 3' -68.2 NC_001798.1 + 25441 0.66 0.409181
Target:  5'- uGCGCCGCCCcgccccccGGCGGcGcGCCcgccgccuucGGCCCGc -3'
miRNA:   3'- -CGCGGCGGGc-------CUGCC-CcUGG----------CCGGGC- -5'
5419 3' -68.2 NC_001798.1 + 31676 0.66 0.409181
Target:  5'- cGCGCCGCCCGccgugcCGGuGGACgCGcaccgcgcGCCCc -3'
miRNA:   3'- -CGCGGCGGGCcu----GCC-CCUG-GC--------CGGGc -5'
5419 3' -68.2 NC_001798.1 + 31139 0.66 0.409181
Target:  5'- aGCGC--CCCGGcGCGGGGGCggCGGUgCGg -3'
miRNA:   3'- -CGCGgcGGGCC-UGCCCCUG--GCCGgGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.