miRNA display CGI


Results 21 - 40 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5419 5' -57.6 NC_001798.1 + 107194 0.67 0.778669
Target:  5'- -cCAGGCCGUGUuGgcGUUC-GuGGCCc -3'
miRNA:   3'- uaGUCCGGCACGuCaaCAAGgC-CCGG- -5'
5419 5' -57.6 NC_001798.1 + 121939 0.67 0.778669
Target:  5'- -gCGGGCCGUGCAGgacGUcacCCGccGCCa -3'
miRNA:   3'- uaGUCCGGCACGUCaa-CAa--GGCc-CGG- -5'
5419 5' -57.6 NC_001798.1 + 30945 0.67 0.769354
Target:  5'- gGUCGGGCgGgggGCGGgcggGggUCGGGCg -3'
miRNA:   3'- -UAGUCCGgCa--CGUCaa--CaaGGCCCGg -5'
5419 5' -57.6 NC_001798.1 + 137000 0.67 0.769354
Target:  5'- -cCAGGCUGUGCAcGUgg-UCCucguuGGCCg -3'
miRNA:   3'- uaGUCCGGCACGU-CAacaAGGc----CCGG- -5'
5419 5' -57.6 NC_001798.1 + 58471 0.67 0.759917
Target:  5'- uUCGGGCCGUGCGGcc---CCGucGCCg -3'
miRNA:   3'- uAGUCCGGCACGUCaacaaGGCc-CGG- -5'
5419 5' -57.6 NC_001798.1 + 146289 0.67 0.759917
Target:  5'- --gAGGCCGaGCGGggagUGggcggCCGGGCg -3'
miRNA:   3'- uagUCCGGCaCGUCa---ACaa---GGCCCGg -5'
5419 5' -57.6 NC_001798.1 + 153825 0.67 0.759917
Target:  5'- -gCAGGCgcggCGUGCGGggccUCCGGcGCCu -3'
miRNA:   3'- uaGUCCG----GCACGUCaacaAGGCC-CGG- -5'
5419 5' -57.6 NC_001798.1 + 76862 0.68 0.750369
Target:  5'- uGUCcGGCCGUGCuGgcGacccUgCGGGCCu -3'
miRNA:   3'- -UAGuCCGGCACGuCaaCa---AgGCCCGG- -5'
5419 5' -57.6 NC_001798.1 + 57408 0.68 0.750369
Target:  5'- -gCGGGUCGUgGCGGUUGcaucgCaCGGGCUc -3'
miRNA:   3'- uaGUCCGGCA-CGUCAACaa---G-GCCCGG- -5'
5419 5' -57.6 NC_001798.1 + 26374 0.68 0.750369
Target:  5'- -gCGGGCCGcgGCGGgaGUUCugcgcgCGGGCg -3'
miRNA:   3'- uaGUCCGGCa-CGUCaaCAAG------GCCCGg -5'
5419 5' -57.6 NC_001798.1 + 12309 0.68 0.73097
Target:  5'- -cCAGGCCcUGCAGcgagcggCCGGGCa -3'
miRNA:   3'- uaGUCCGGcACGUCaacaa--GGCCCGg -5'
5419 5' -57.6 NC_001798.1 + 136594 0.68 0.73097
Target:  5'- -aCAGuCCGUGCGGggGa--CGGGCCc -3'
miRNA:   3'- uaGUCcGGCACGUCaaCaagGCCCGG- -5'
5419 5' -57.6 NC_001798.1 + 6584 0.68 0.721139
Target:  5'- -aCGGGCCGggggGaCGGggGga-CGGGCCg -3'
miRNA:   3'- uaGUCCGGCa---C-GUCaaCaagGCCCGG- -5'
5419 5' -57.6 NC_001798.1 + 6542 0.68 0.721139
Target:  5'- -aCGGGCCGggggGaCGGggGga-CGGGCCg -3'
miRNA:   3'- uaGUCCGGCa---C-GUCaaCaagGCCCGG- -5'
5419 5' -57.6 NC_001798.1 + 135314 0.68 0.711233
Target:  5'- -cCGGGCCGUGCuGgaGcgCCuGGuGCCg -3'
miRNA:   3'- uaGUCCGGCACGuCaaCaaGG-CC-CGG- -5'
5419 5' -57.6 NC_001798.1 + 4079 0.69 0.691227
Target:  5'- ---cGGUCGccGCGGggG-UCCGGGCCg -3'
miRNA:   3'- uaguCCGGCa-CGUCaaCaAGGCCCGG- -5'
5419 5' -57.6 NC_001798.1 + 150855 0.69 0.681147
Target:  5'- gGUCGGGUCGcgGCGGgcugggagGUUCCgcGGGUCg -3'
miRNA:   3'- -UAGUCCGGCa-CGUCaa------CAAGG--CCCGG- -5'
5419 5' -57.6 NC_001798.1 + 101746 0.69 0.671027
Target:  5'- -cCGGGCCGUGUccacGUUCacguGGGCCg -3'
miRNA:   3'- uaGUCCGGCACGucaaCAAGg---CCCGG- -5'
5419 5' -57.6 NC_001798.1 + 28647 0.69 0.671027
Target:  5'- -gCGGGCCGaccGCGaccgGUUCCGGcGCCg -3'
miRNA:   3'- uaGUCCGGCa--CGUcaa-CAAGGCC-CGG- -5'
5419 5' -57.6 NC_001798.1 + 15416 0.69 0.671027
Target:  5'- -gCGGGuCCGggaGgGGUUGUUUgGGGCCc -3'
miRNA:   3'- uaGUCC-GGCa--CgUCAACAAGgCCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.