miRNA display CGI


Results 41 - 60 of 261 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5422 3' -60.2 NC_001798.1 + 77435 0.66 0.763053
Target:  5'- cGCCgGGCCuGCGcccaGCCGG--AGGGGGaCCa -3'
miRNA:   3'- -CGG-UCGG-CGCa---CGGCUugUCCUCC-GG- -5'
5422 3' -60.2 NC_001798.1 + 87757 0.66 0.763053
Target:  5'- gGCCcugAGCCGCGcgGCCacgucgucCGGGGGGUg -3'
miRNA:   3'- -CGG---UCGGCGCa-CGGcuu-----GUCCUCCGg -5'
5422 3' -60.2 NC_001798.1 + 119894 0.66 0.763053
Target:  5'- cCCGGUCGgG-GCCGc-CAGGuaaauGGCCa -3'
miRNA:   3'- cGGUCGGCgCaCGGCuuGUCCu----CCGG- -5'
5422 3' -60.2 NC_001798.1 + 152504 0.66 0.763053
Target:  5'- -aUAGCCGCGcGCCccgGCGGG-GGCg -3'
miRNA:   3'- cgGUCGGCGCaCGGcu-UGUCCuCCGg -5'
5422 3' -60.2 NC_001798.1 + 52485 0.66 0.763053
Target:  5'- gGCCuGCggggaCGCGcGCCGGcGCAGGGacgacgcggcGGCCg -3'
miRNA:   3'- -CGGuCG-----GCGCaCGGCU-UGUCCU----------CCGG- -5'
5422 3' -60.2 NC_001798.1 + 81708 0.66 0.75381
Target:  5'- cGCCGcuuucuccGCCGcCGUGCCGcgcgugcGCAGGucccGCCg -3'
miRNA:   3'- -CGGU--------CGGC-GCACGGCu------UGUCCuc--CGG- -5'
5422 3' -60.2 NC_001798.1 + 4080 0.66 0.75381
Target:  5'- gGUC-GCCGCGgggguccggGCCgGGGCGGGcucGGCCc -3'
miRNA:   3'- -CGGuCGGCGCa--------CGG-CUUGUCCu--CCGG- -5'
5422 3' -60.2 NC_001798.1 + 15173 0.66 0.744466
Target:  5'- gGUCcGCCGCGaUGUUcggggGGugGGGGGGCUg -3'
miRNA:   3'- -CGGuCGGCGC-ACGG-----CUugUCCUCCGG- -5'
5422 3' -60.2 NC_001798.1 + 24163 0.66 0.744466
Target:  5'- cGCCauGGCgGCGgGCCGcuuCGGcuGGGGCCu -3'
miRNA:   3'- -CGG--UCGgCGCaCGGCuu-GUC--CUCCGG- -5'
5422 3' -60.2 NC_001798.1 + 73902 0.66 0.744466
Target:  5'- gGCC--CCGCGacgUGCUGucCGcGGAGGCCa -3'
miRNA:   3'- -CGGucGGCGC---ACGGCuuGU-CCUCCGG- -5'
5422 3' -60.2 NC_001798.1 + 121285 0.66 0.744466
Target:  5'- uGCgCGGCCGCcccgaCGGugGGGcGGCCg -3'
miRNA:   3'- -CG-GUCGGCGcacg-GCUugUCCuCCGG- -5'
5422 3' -60.2 NC_001798.1 + 131129 0.66 0.744466
Target:  5'- gGCCAGCaggcucuGCGUGUCcaaccgGAGgGGGAcGGCUa -3'
miRNA:   3'- -CGGUCGg------CGCACGG------CUUgUCCU-CCGG- -5'
5422 3' -60.2 NC_001798.1 + 135304 0.66 0.744466
Target:  5'- aGCCcugGGCC-CGgGCCGuGCuGGAGcGCCu -3'
miRNA:   3'- -CGG---UCGGcGCaCGGCuUGuCCUC-CGG- -5'
5422 3' -60.2 NC_001798.1 + 147167 0.66 0.744466
Target:  5'- gGgUAGCCGCccggcGCCGGGCGGaAGGCg -3'
miRNA:   3'- -CgGUCGGCGca---CGGCUUGUCcUCCGg -5'
5422 3' -60.2 NC_001798.1 + 128493 0.66 0.744466
Target:  5'- cGCCAGCCuGCG-GCUGGACGcccagucgucGGcGGUg -3'
miRNA:   3'- -CGGUCGG-CGCaCGGCUUGU----------CCuCCGg -5'
5422 3' -60.2 NC_001798.1 + 111233 0.66 0.751017
Target:  5'- cGCCAG-CGCGUcGCgGAACAGcccguucauggcaucGGCCa -3'
miRNA:   3'- -CGGUCgGCGCA-CGgCUUGUCcu-------------CCGG- -5'
5422 3' -60.2 NC_001798.1 + 121385 0.66 0.75288
Target:  5'- uGCC-GCCuaCGUGCCGGcggaugcGguGGGGGCg -3'
miRNA:   3'- -CGGuCGGc-GCACGGCU-------UguCCUCCGg -5'
5422 3' -60.2 NC_001798.1 + 151137 0.66 0.75288
Target:  5'- gGCCAggucaucguccucGUCGUccGUGCCGGGCcacgGGGGGGUg -3'
miRNA:   3'- -CGGU-------------CGGCG--CACGGCUUG----UCCUCCGg -5'
5422 3' -60.2 NC_001798.1 + 25762 0.66 0.75381
Target:  5'- gGCguGCUGC-UGCUGuccacGCGGGAccuGGCCu -3'
miRNA:   3'- -CGguCGGCGcACGGCu----UGUCCU---CCGG- -5'
5422 3' -60.2 NC_001798.1 + 83558 0.66 0.75381
Target:  5'- uGUCGGCgGUaaugGUGCUGGggcggugaaacuGCGGGGcGGCCa -3'
miRNA:   3'- -CGGUCGgCG----CACGGCU------------UGUCCU-CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.