Results 41 - 60 of 256 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5423 | 3' | -67.8 | NC_001798.1 | + | 1188 | 0.66 | 0.432746 |
Target: 5'- ----gCCGCCGccCGCCGCGGCCagcaCCGu -3' miRNA: 3'- guccaGGCGGCc-GCGGUGCCGGg---GGC- -5' |
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5423 | 3' | -67.8 | NC_001798.1 | + | 91610 | 0.66 | 0.432746 |
Target: 5'- gCAGG-CCGCgcuuaugGGCGgC-CGGCCgCCCGg -3' miRNA: 3'- -GUCCaGGCGg------CCGCgGuGCCGG-GGGC- -5' |
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5423 | 3' | -67.8 | NC_001798.1 | + | 126265 | 0.66 | 0.432746 |
Target: 5'- cCGGG--CGuCCGGaCGCCcaaGCGGCCCCUc -3' miRNA: 3'- -GUCCagGC-GGCC-GCGG---UGCCGGGGGc -5' |
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5423 | 3' | -67.8 | NC_001798.1 | + | 127745 | 0.66 | 0.432746 |
Target: 5'- -cGG-CCGCCgcaacacccGGCGCCAaGcGCCCCgCGg -3' miRNA: 3'- guCCaGGCGG---------CCGCGGUgC-CGGGG-GC- -5' |
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5423 | 3' | -67.8 | NC_001798.1 | + | 154487 | 0.66 | 0.432746 |
Target: 5'- ----cCCGCgGGCGCCGCcccucCCCCCGc -3' miRNA: 3'- guccaGGCGgCCGCGGUGcc---GGGGGC- -5' |
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5423 | 3' | -67.8 | NC_001798.1 | + | 134994 | 0.66 | 0.42456 |
Target: 5'- -uGGcCCGCggugGGCGCCAgGgucguccuGCCCCCGc -3' miRNA: 3'- guCCaGGCGg---CCGCGGUgC--------CGGGGGC- -5' |
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5423 | 3' | -67.8 | NC_001798.1 | + | 1402 | 0.66 | 0.42456 |
Target: 5'- aCGGG-CCGCagCGGCGCgCccaGGCCCCa- -3' miRNA: 3'- -GUCCaGGCG--GCCGCG-Gug-CCGGGGgc -5' |
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5423 | 3' | -67.8 | NC_001798.1 | + | 99128 | 0.66 | 0.416466 |
Target: 5'- gGGGUCUGCC-GCuCCACGGCCaaguaCGu -3' miRNA: 3'- gUCCAGGCGGcCGcGGUGCCGGgg---GC- -5' |
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5423 | 3' | -67.8 | NC_001798.1 | + | 111730 | 0.66 | 0.416466 |
Target: 5'- -uGGcCCGCuUGGCcCC-CGcGCCCCCGg -3' miRNA: 3'- guCCaGGCG-GCCGcGGuGC-CGGGGGC- -5' |
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5423 | 3' | -67.8 | NC_001798.1 | + | 2797 | 0.66 | 0.416466 |
Target: 5'- gCGGGcUCCGCgGcaGCGCCGggcccaGGgCCCCGg -3' miRNA: 3'- -GUCC-AGGCGgC--CGCGGUg-----CCgGGGGC- -5' |
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5423 | 3' | -67.8 | NC_001798.1 | + | 23226 | 0.66 | 0.416466 |
Target: 5'- uGGGUCCGCggacCGGagacgaCGuCCGCGGUCCgCGg -3' miRNA: 3'- gUCCAGGCG----GCC------GC-GGUGCCGGGgGC- -5' |
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5423 | 3' | -67.8 | NC_001798.1 | + | 23797 | 0.66 | 0.416466 |
Target: 5'- gCGGGgagCCGuggcCCGGgGCC--GGCCCCCc -3' miRNA: 3'- -GUCCa--GGC----GGCCgCGGugCCGGGGGc -5' |
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5423 | 3' | -67.8 | NC_001798.1 | + | 31984 | 0.66 | 0.416466 |
Target: 5'- gGGGgCCaagagGgCGGCGCCGCgccgGGCCCCgGa -3' miRNA: 3'- gUCCaGG-----CgGCCGCGGUG----CCGGGGgC- -5' |
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5423 | 3' | -67.8 | NC_001798.1 | + | 96663 | 0.66 | 0.416466 |
Target: 5'- ----cCCGagCGGCGCCACGGCCgCgCUGg -3' miRNA: 3'- guccaGGCg-GCCGCGGUGCCGG-G-GGC- -5' |
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5423 | 3' | -67.8 | NC_001798.1 | + | 101768 | 0.66 | 0.416466 |
Target: 5'- uGGGccgcgCUGCUGGCGUUAacuaaggccCGGCCUCCGc -3' miRNA: 3'- gUCCa----GGCGGCCGCGGU---------GCCGGGGGC- -5' |
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5423 | 3' | -67.8 | NC_001798.1 | + | 96994 | 0.66 | 0.416466 |
Target: 5'- gCGGGgCCaggGCCGGC-CCGCcGCCCgCCGa -3' miRNA: 3'- -GUCCaGG---CGGCCGcGGUGcCGGG-GGC- -5' |
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5423 | 3' | -67.8 | NC_001798.1 | + | 80929 | 0.66 | 0.416466 |
Target: 5'- ----aUCGCCGaGCGCCcucucgccgACgGGCCCCCGu -3' miRNA: 3'- guccaGGCGGC-CGCGG---------UG-CCGGGGGC- -5' |
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5423 | 3' | -67.8 | NC_001798.1 | + | 24173 | 0.66 | 0.423746 |
Target: 5'- gCGGG-CCGCUucggcuggggccuGGCGCacgugGCGGCCgCCGu -3' miRNA: 3'- -GUCCaGGCGG-------------CCGCGg----UGCCGGgGGC- -5' |
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5423 | 3' | -67.8 | NC_001798.1 | + | 77615 | 0.66 | 0.42456 |
Target: 5'- aAGGUCa-UCGGCGCCACGcgacGCCgCgCCGa -3' miRNA: 3'- gUCCAGgcGGCCGCGGUGC----CGG-G-GGC- -5' |
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5423 | 3' | -67.8 | NC_001798.1 | + | 180 | 0.66 | 0.42456 |
Target: 5'- gCGGGgcugccuucCCGCgGGCGCCcccgcGCGGCUuuuuuCCCGc -3' miRNA: 3'- -GUCCa--------GGCGgCCGCGG-----UGCCGG-----GGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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