miRNA display CGI


Results 21 - 40 of 305 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5423 5' -52.4 NC_001798.1 + 46655 0.66 0.980714
Target:  5'- gACGAGaccGAGCAUCAcgUGGgGCCCgggGCCg -3'
miRNA:   3'- gUGUUU---UUUGUGGU--ACCgCGGG---CGGg -5'
5423 5' -52.4 NC_001798.1 + 59292 0.66 0.980714
Target:  5'- uGCGAAGGGC-CCc-GG-GCCCGCUCu -3'
miRNA:   3'- gUGUUUUUUGuGGuaCCgCGGGCGGG- -5'
5423 5' -52.4 NC_001798.1 + 8929 0.66 0.980714
Target:  5'- uCACGAuuuuuauGAGCugCGgcggGGUGgCCGCCg -3'
miRNA:   3'- -GUGUUu------UUUGugGUa---CCGCgGGCGGg -5'
5423 5' -52.4 NC_001798.1 + 37135 0.66 0.980714
Target:  5'- gGCGAGGuguGugAgCGUGGcCGCUCGCgCCg -3'
miRNA:   3'- gUGUUUU---UugUgGUACC-GCGGGCG-GG- -5'
5423 5' -52.4 NC_001798.1 + 55141 0.66 0.980714
Target:  5'- aGCcuGucGC-CCAUGccCGCCCGCCCc -3'
miRNA:   3'- gUGuuUuuUGuGGUACc-GCGGGCGGG- -5'
5423 5' -52.4 NC_001798.1 + 65363 0.66 0.980714
Target:  5'- cCGCGcuGcGCACgAUGGCGUaCGCCa -3'
miRNA:   3'- -GUGUuuUuUGUGgUACCGCGgGCGGg -5'
5423 5' -52.4 NC_001798.1 + 1951 0.66 0.980714
Target:  5'- aGCAGcAGcACGCCcUGcGCGCCCaGCgCCg -3'
miRNA:   3'- gUGUU-UUuUGUGGuAC-CGCGGG-CG-GG- -5'
5423 5' -52.4 NC_001798.1 + 25860 0.66 0.980714
Target:  5'- ------cAACGCCGUGcGCGCCgcggacugGCCCg -3'
miRNA:   3'- guguuuuUUGUGGUAC-CGCGGg-------CGGG- -5'
5423 5' -52.4 NC_001798.1 + 120762 0.66 0.980714
Target:  5'- aGCAGGAAcAgGCCGUGGCGUuggugugcgucaCCaCCCg -3'
miRNA:   3'- gUGUUUUU-UgUGGUACCGCG------------GGcGGG- -5'
5423 5' -52.4 NC_001798.1 + 86343 0.66 0.980714
Target:  5'- ------cGACGCCugagGGCGUCCGUCg -3'
miRNA:   3'- guguuuuUUGUGGua--CCGCGGGCGGg -5'
5423 5' -52.4 NC_001798.1 + 102496 0.66 0.980496
Target:  5'- uGCGGGGAcgggccgGCGCCggGGUGUCCGUaggCCa -3'
miRNA:   3'- gUGUUUUU-------UGUGGuaCCGCGGGCG---GG- -5'
5423 5' -52.4 NC_001798.1 + 91609 0.66 0.978447
Target:  5'- gGCAGGccGCGCUuaugGGCGgccggCCGCCCg -3'
miRNA:   3'- gUGUUUuuUGUGGua--CCGCg----GGCGGG- -5'
5423 5' -52.4 NC_001798.1 + 97110 0.66 0.978447
Target:  5'- aGCGAGcuGCGCUucuggcUGGCGUCCggcgaucgcGCCCg -3'
miRNA:   3'- gUGUUUuuUGUGGu-----ACCGCGGG---------CGGG- -5'
5423 5' -52.4 NC_001798.1 + 26472 0.66 0.978447
Target:  5'- cCGCAGAu-ACGCUG-GGCGUCgGCCg -3'
miRNA:   3'- -GUGUUUuuUGUGGUaCCGCGGgCGGg -5'
5423 5' -52.4 NC_001798.1 + 57838 0.66 0.978447
Target:  5'- -cCAAccuAACACCcuaacagugAUGG-GCCCGCCUg -3'
miRNA:   3'- guGUUuu-UUGUGG---------UACCgCGGGCGGG- -5'
5423 5' -52.4 NC_001798.1 + 79107 0.66 0.978447
Target:  5'- gGCGuccuGGGCGCCAagGGCGCCgaGCgCg -3'
miRNA:   3'- gUGUuu--UUUGUGGUa-CCGCGGg-CGgG- -5'
5423 5' -52.4 NC_001798.1 + 82075 0.66 0.978447
Target:  5'- cCGCGGccggccCACCccGGCGCCucacgCGCCCc -3'
miRNA:   3'- -GUGUUuuuu--GUGGuaCCGCGG-----GCGGG- -5'
5423 5' -52.4 NC_001798.1 + 133464 0.66 0.978447
Target:  5'- gCGCGuggccGACGCCcUGaGCGgCUGCCCc -3'
miRNA:   3'- -GUGUuuu--UUGUGGuAC-CGCgGGCGGG- -5'
5423 5' -52.4 NC_001798.1 + 149244 0.66 0.978447
Target:  5'- cCGCGGGGGcguCGCCGgccGGCGCgggcgCGCCCu -3'
miRNA:   3'- -GUGUUUUUu--GUGGUa--CCGCGg----GCGGG- -5'
5423 5' -52.4 NC_001798.1 + 77253 0.66 0.97599
Target:  5'- aCGCGGugucgGCCcugGGCGCggCCGCCCg -3'
miRNA:   3'- -GUGUUuuuugUGGua-CCGCG--GGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.