miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5424 5' -57.5 NC_001798.1 + 107472 0.66 0.856952
Target:  5'- -gCGCGGGgucucuGCCCCGCaUCGAGGAc-- -3'
miRNA:   3'- caGCGCCC------CGGGGUGcAGCUUUUcuu -5'
5424 5' -57.5 NC_001798.1 + 122047 0.66 0.849148
Target:  5'- cGUCaGCGGGggaGCCCUgggcGCGUCGGAcgcGGAGg -3'
miRNA:   3'- -CAG-CGCCC---CGGGG----UGCAGCUUu--UCUU- -5'
5424 5' -57.5 NC_001798.1 + 104541 0.66 0.841149
Target:  5'- cGUCGCGGuGGgC-CACGUCGucGGGGu -3'
miRNA:   3'- -CAGCGCC-CCgGgGUGCAGCuuUUCUu -5'
5424 5' -57.5 NC_001798.1 + 149670 0.66 0.832961
Target:  5'- gGUCGC-GGGCCCCGgGcUCGggGc--- -3'
miRNA:   3'- -CAGCGcCCCGGGGUgC-AGCuuUucuu -5'
5424 5' -57.5 NC_001798.1 + 43032 0.66 0.81605
Target:  5'- -gCGCGGGGCCCCGgG-CGcAAAu-- -3'
miRNA:   3'- caGCGCCCCGGGGUgCaGCuUUUcuu -5'
5424 5' -57.5 NC_001798.1 + 56402 0.67 0.807343
Target:  5'- --gGUGGGGUCCCGCGgCGggGGc-- -3'
miRNA:   3'- cagCGCCCCGGGGUGCaGCuuUUcuu -5'
5424 5' -57.5 NC_001798.1 + 97552 0.67 0.807343
Target:  5'- -gCGCGGGGaCgCCCGCGagCGAGgacGGGGAg -3'
miRNA:   3'- caGCGCCCC-G-GGGUGCa-GCUU---UUCUU- -5'
5424 5' -57.5 NC_001798.1 + 144122 0.67 0.807343
Target:  5'- cGUCGUcgGGGGUacaauaCCGCGUCcAGGAGAAc -3'
miRNA:   3'- -CAGCG--CCCCGg-----GGUGCAGcUUUUCUU- -5'
5424 5' -57.5 NC_001798.1 + 72593 0.67 0.807343
Target:  5'- cUCGCGGGGCUgCGgucCGUCGucaccGAGAc -3'
miRNA:   3'- cAGCGCCCCGGgGU---GCAGCuu---UUCUu -5'
5424 5' -57.5 NC_001798.1 + 116801 0.67 0.798478
Target:  5'- -aCGCGGGcGCCaacaCCGCGUCGAc----- -3'
miRNA:   3'- caGCGCCC-CGG----GGUGCAGCUuuucuu -5'
5424 5' -57.5 NC_001798.1 + 109249 0.67 0.789464
Target:  5'- cUCGCGGGGCUgcucgCCuCGUCGggGu--- -3'
miRNA:   3'- cAGCGCCCCGG-----GGuGCAGCuuUucuu -5'
5424 5' -57.5 NC_001798.1 + 26557 0.67 0.771023
Target:  5'- -cCGCGGGGCUggCCACGcCGccGAGGc -3'
miRNA:   3'- caGCGCCCCGG--GGUGCaGCuuUUCUu -5'
5424 5' -57.5 NC_001798.1 + 146849 0.68 0.761614
Target:  5'- -aCGCaGGGGCCcgCCGCcGaUCGAGAGGGAc -3'
miRNA:   3'- caGCG-CCCCGG--GGUG-C-AGCUUUUCUU- -5'
5424 5' -57.5 NC_001798.1 + 143241 0.68 0.761614
Target:  5'- --gGCGGcGCCCCAguuCGUCGAucGAAGAu -3'
miRNA:   3'- cagCGCCcCGGGGU---GCAGCU--UUUCUu -5'
5424 5' -57.5 NC_001798.1 + 77540 0.68 0.752092
Target:  5'- uUCG-GGGGCCUgcugCACGcCGAAGGGAc -3'
miRNA:   3'- cAGCgCCCCGGG----GUGCaGCUUUUCUu -5'
5424 5' -57.5 NC_001798.1 + 22164 0.68 0.742464
Target:  5'- -gCGCGGGGCCggcaucucauuaCCACGaaccCGGAAGGGc -3'
miRNA:   3'- caGCGCCCCGG------------GGUGCa---GCUUUUCUu -5'
5424 5' -57.5 NC_001798.1 + 29669 0.68 0.732741
Target:  5'- --aGCGGcGGCCCgGCGg-GAGGAGGAg -3'
miRNA:   3'- cagCGCC-CCGGGgUGCagCUUUUCUU- -5'
5424 5' -57.5 NC_001798.1 + 38178 0.69 0.683011
Target:  5'- aGUgGaUGGGGCCgCugGUCGAGcAGGAg -3'
miRNA:   3'- -CAgC-GCCCCGGgGugCAGCUUuUCUU- -5'
5424 5' -57.5 NC_001798.1 + 153119 0.7 0.642422
Target:  5'- -aCGCGGGGCuCCCAuCGUCucuucGGAGAGc -3'
miRNA:   3'- caGCGCCCCG-GGGU-GCAGcu---UUUCUU- -5'
5424 5' -57.5 NC_001798.1 + 73896 0.7 0.630196
Target:  5'- -aCGUGGGGCCCCGCGaCGugcuguccgcGGAGg -3'
miRNA:   3'- caGCGCCCCGGGGUGCaGCuuu-------UCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.