miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5425 3' -60.1 NC_001798.1 + 109028 0.66 0.759066
Target:  5'- cGGUGCUccccgGGCCUCCggCCGGCcCCAGGUa -3'
miRNA:   3'- -CUAUGG-----CUGGGGG--GGCCGaGGUCUAg -5'
5425 3' -60.1 NC_001798.1 + 83878 0.66 0.759066
Target:  5'- --cGgCGACCCCcggCCCGggcGCUCCGGAa- -3'
miRNA:   3'- cuaUgGCUGGGG---GGGC---CGAGGUCUag -5'
5425 3' -60.1 NC_001798.1 + 139012 0.66 0.749726
Target:  5'- cGAUAUCG-CCCUCCCGGgcgUUCCGGu-- -3'
miRNA:   3'- -CUAUGGCuGGGGGGGCC---GAGGUCuag -5'
5425 3' -60.1 NC_001798.1 + 118510 0.66 0.749726
Target:  5'- ---uCCGGCCCUCCCGcacccccgcGUUCCGGuGUCu -3'
miRNA:   3'- cuauGGCUGGGGGGGC---------CGAGGUC-UAG- -5'
5425 3' -60.1 NC_001798.1 + 88764 0.66 0.740289
Target:  5'- cAUGCCGGCCgCCUCCGGaaagucggCCAgcagcuGAUCg -3'
miRNA:   3'- cUAUGGCUGG-GGGGGCCga------GGU------CUAG- -5'
5425 3' -60.1 NC_001798.1 + 151111 0.66 0.73839
Target:  5'- ---cCCGACCCCCgCCcGCccucaccgucggCCAGGUCa -3'
miRNA:   3'- cuauGGCUGGGGG-GGcCGa-----------GGUCUAG- -5'
5425 3' -60.1 NC_001798.1 + 27971 0.66 0.730762
Target:  5'- --nGCCGugCCgcgCCCCGGCgcUCCAGc-- -3'
miRNA:   3'- cuaUGGCugGG---GGGGCCG--AGGUCuag -5'
5425 3' -60.1 NC_001798.1 + 103054 0.66 0.730762
Target:  5'- ---gUCGcACCCCCUCGcGCgucgCCGGGUCc -3'
miRNA:   3'- cuauGGC-UGGGGGGGC-CGa---GGUCUAG- -5'
5425 3' -60.1 NC_001798.1 + 5565 0.66 0.729805
Target:  5'- --cGuuGGCCCCCgCCGGCcCCAaaggggccggcgaGGUCg -3'
miRNA:   3'- cuaUggCUGGGGG-GGCCGaGGU-------------CUAG- -5'
5425 3' -60.1 NC_001798.1 + 39587 0.66 0.721154
Target:  5'- gGGUGgCGACCCCCuuGGUUgUGGGc- -3'
miRNA:   3'- -CUAUgGCUGGGGGggCCGAgGUCUag -5'
5425 3' -60.1 NC_001798.1 + 147083 0.66 0.721154
Target:  5'- --gGCCGcCCCCUCCGGCgCCGc--- -3'
miRNA:   3'- cuaUGGCuGGGGGGGCCGaGGUcuag -5'
5425 3' -60.1 NC_001798.1 + 79760 0.66 0.721154
Target:  5'- cGUGCUGACCgUCgugaaCCGGCUCCAGc-- -3'
miRNA:   3'- cUAUGGCUGGgGG-----GGCCGAGGUCuag -5'
5425 3' -60.1 NC_001798.1 + 115734 0.66 0.721154
Target:  5'- ---cCCGGCggcgaaguCCCCCCGGCcggUCCGGGg- -3'
miRNA:   3'- cuauGGCUG--------GGGGGGCCG---AGGUCUag -5'
5425 3' -60.1 NC_001798.1 + 137919 0.66 0.711474
Target:  5'- --cGCCGggcggcccgcGCCuCCCCCGGCcgCCcGGUCc -3'
miRNA:   3'- cuaUGGC----------UGG-GGGGGCCGa-GGuCUAG- -5'
5425 3' -60.1 NC_001798.1 + 4735 0.66 0.711474
Target:  5'- ----aCGGCCUCCCCGGacgCCGGGg- -3'
miRNA:   3'- cuaugGCUGGGGGGGCCga-GGUCUag -5'
5425 3' -60.1 NC_001798.1 + 22128 0.66 0.711474
Target:  5'- --cGCCGGCCCCUuuGGggCCGGc-- -3'
miRNA:   3'- cuaUGGCUGGGGGggCCgaGGUCuag -5'
5425 3' -60.1 NC_001798.1 + 47625 0.67 0.70173
Target:  5'- ---cCCGGUCUCCCCGGCggacCCAGAg- -3'
miRNA:   3'- cuauGGCUGGGGGGGCCGa---GGUCUag -5'
5425 3' -60.1 NC_001798.1 + 58111 0.67 0.70173
Target:  5'- --gGCCG-CCCagggCCCGGCgUCUGGGUCc -3'
miRNA:   3'- cuaUGGCuGGGg---GGGCCG-AGGUCUAG- -5'
5425 3' -60.1 NC_001798.1 + 9032 0.67 0.691931
Target:  5'- --cACCG-CCCCCCgcagccagcgcaCGGCgagCCAGGUg -3'
miRNA:   3'- cuaUGGCuGGGGGG------------GCCGa--GGUCUAg -5'
5425 3' -60.1 NC_001798.1 + 2813 0.67 0.682084
Target:  5'- --cGCCgGGCCCagggCCCCGGCgaCCAGGcUCa -3'
miRNA:   3'- cuaUGG-CUGGG----GGGGCCGa-GGUCU-AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.