miRNA display CGI


Results 21 - 40 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5425 3' -60.1 NC_001798.1 + 3903 0.67 0.682084
Target:  5'- --gGCCGGCCCCgggCCaCGGCUCCc---- -3'
miRNA:   3'- cuaUGGCUGGGG---GG-GCCGAGGucuag -5'
5425 3' -60.1 NC_001798.1 + 143301 0.67 0.672198
Target:  5'- --gGCCGuCCgCCCCCGGC---GGGUCg -3'
miRNA:   3'- cuaUGGCuGG-GGGGGCCGaggUCUAG- -5'
5425 3' -60.1 NC_001798.1 + 120880 0.67 0.672198
Target:  5'- cGUGCUGGCCUUCCCGGUguu-GGUCg -3'
miRNA:   3'- cUAUGGCUGGGGGGGCCGagguCUAG- -5'
5425 3' -60.1 NC_001798.1 + 71413 0.67 0.662282
Target:  5'- gGGUGCCcgcgcgGACgCCCCCCGGC-CaCGGGcUCa -3'
miRNA:   3'- -CUAUGG------CUG-GGGGGGCCGaG-GUCU-AG- -5'
5425 3' -60.1 NC_001798.1 + 31204 0.67 0.652342
Target:  5'- --gACCGGCgCCCCCUGGCgcccCgCGGAg- -3'
miRNA:   3'- cuaUGGCUG-GGGGGGCCGa---G-GUCUag -5'
5425 3' -60.1 NC_001798.1 + 70135 0.67 0.652342
Target:  5'- --gGCaUGACCCCCCCGuccGCUCCAc--- -3'
miRNA:   3'- cuaUG-GCUGGGGGGGC---CGAGGUcuag -5'
5425 3' -60.1 NC_001798.1 + 7030 0.67 0.652342
Target:  5'- ----gUGACCCCCCCauGGCaUCCGGGg- -3'
miRNA:   3'- cuaugGCUGGGGGGG--CCG-AGGUCUag -5'
5425 3' -60.1 NC_001798.1 + 18581 0.67 0.649357
Target:  5'- --gGCCGugugauagcaagcaGCCCCCCCGGgUCCGcGcgCc -3'
miRNA:   3'- cuaUGGC--------------UGGGGGGGCCgAGGU-CuaG- -5'
5425 3' -60.1 NC_001798.1 + 66995 0.68 0.632424
Target:  5'- ---gUCG-CCCCUgCGGC-CCAGAUCg -3'
miRNA:   3'- cuauGGCuGGGGGgGCCGaGGUCUAG- -5'
5425 3' -60.1 NC_001798.1 + 124065 0.68 0.632424
Target:  5'- -uUACCGACCCCCCgggaggaggCGGCgCCuGcgCc -3'
miRNA:   3'- cuAUGGCUGGGGGG---------GCCGaGGuCuaG- -5'
5425 3' -60.1 NC_001798.1 + 7787 0.68 0.622462
Target:  5'- --cACCG-CCCCCgCUGGCgggagCCAGgGUCg -3'
miRNA:   3'- cuaUGGCuGGGGG-GGCCGa----GGUC-UAG- -5'
5425 3' -60.1 NC_001798.1 + 122463 0.68 0.612506
Target:  5'- --aGCUGuCCCCCgCGGC-CCAGAc- -3'
miRNA:   3'- cuaUGGCuGGGGGgGCCGaGGUCUag -5'
5425 3' -60.1 NC_001798.1 + 30434 0.68 0.612506
Target:  5'- ---cCCGGCCcggCCCCCGGCcgagcgCCAGggCa -3'
miRNA:   3'- cuauGGCUGG---GGGGGCCGa-----GGUCuaG- -5'
5425 3' -60.1 NC_001798.1 + 68695 0.68 0.611511
Target:  5'- --cGCCccccaggGGCCCCCCaggcacagcuCGGCgUCCAGGUCc -3'
miRNA:   3'- cuaUGG-------CUGGGGGG----------GCCG-AGGUCUAG- -5'
5425 3' -60.1 NC_001798.1 + 151269 0.68 0.592643
Target:  5'- cGUGCCGGCCCgcacggccgCCUCGGcCUCCacgcGGGUCc -3'
miRNA:   3'- cUAUGGCUGGG---------GGGGCC-GAGG----UCUAG- -5'
5425 3' -60.1 NC_001798.1 + 28650 0.69 0.582749
Target:  5'- --gGCCGACCgCgaCCGGUUCCGGcgCc -3'
miRNA:   3'- cuaUGGCUGGgGg-GGCCGAGGUCuaG- -5'
5425 3' -60.1 NC_001798.1 + 145563 0.69 0.563068
Target:  5'- --cGCCGGcgccCCCUCCCGGCgcuUCCGGgGUCu -3'
miRNA:   3'- cuaUGGCU----GGGGGGGCCG---AGGUC-UAG- -5'
5425 3' -60.1 NC_001798.1 + 27863 0.69 0.563068
Target:  5'- ---cCCGACgCgCUCCGGCUCCGGGc- -3'
miRNA:   3'- cuauGGCUGgG-GGGGCCGAGGUCUag -5'
5425 3' -60.1 NC_001798.1 + 108929 0.69 0.54357
Target:  5'- uGAUAUCGAUgcgggacagCCCUCCGGC-CgAGAUCa -3'
miRNA:   3'- -CUAUGGCUG---------GGGGGGCCGaGgUCUAG- -5'
5425 3' -60.1 NC_001798.1 + 46418 0.69 0.54357
Target:  5'- --cACCG-CCCCCCCGGCggucgCgAGcgCc -3'
miRNA:   3'- cuaUGGCuGGGGGGGCCGa----GgUCuaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.