miRNA display CGI


Results 1 - 20 of 67 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5425 3' -60.1 NC_001798.1 + 2813 0.67 0.682084
Target:  5'- --cGCCgGGCCCagggCCCCGGCgaCCAGGcUCa -3'
miRNA:   3'- cuaUGG-CUGGG----GGGGCCGa-GGUCU-AG- -5'
5425 3' -60.1 NC_001798.1 + 3029 0.72 0.398601
Target:  5'- cGGgcuCCGGCCagCCCCGGCacggccgCCAGGUCg -3'
miRNA:   3'- -CUau-GGCUGGg-GGGGCCGa------GGUCUAG- -5'
5425 3' -60.1 NC_001798.1 + 3903 0.67 0.682084
Target:  5'- --gGCCGGCCCCgggCCaCGGCUCCc---- -3'
miRNA:   3'- cuaUGGCUGGGG---GG-GCCGAGGucuag -5'
5425 3' -60.1 NC_001798.1 + 4735 0.66 0.711474
Target:  5'- ----aCGGCCUCCCCGGacgCCGGGg- -3'
miRNA:   3'- cuaugGCUGGGGGGGCCga-GGUCUag -5'
5425 3' -60.1 NC_001798.1 + 5565 0.66 0.729805
Target:  5'- --cGuuGGCCCCCgCCGGCcCCAaaggggccggcgaGGUCg -3'
miRNA:   3'- cuaUggCUGGGGG-GGCCGaGGU-------------CUAG- -5'
5425 3' -60.1 NC_001798.1 + 7030 0.67 0.652342
Target:  5'- ----gUGACCCCCCCauGGCaUCCGGGg- -3'
miRNA:   3'- cuaugGCUGGGGGGG--CCG-AGGUCUag -5'
5425 3' -60.1 NC_001798.1 + 7639 0.74 0.300633
Target:  5'- --gACCGGCCCccggagucCCCCGGCUCCGaGUUg -3'
miRNA:   3'- cuaUGGCUGGG--------GGGGCCGAGGUcUAG- -5'
5425 3' -60.1 NC_001798.1 + 7787 0.68 0.622462
Target:  5'- --cACCG-CCCCCgCUGGCgggagCCAGgGUCg -3'
miRNA:   3'- cuaUGGCuGGGGG-GGCCGa----GGUC-UAG- -5'
5425 3' -60.1 NC_001798.1 + 9032 0.67 0.691931
Target:  5'- --cACCG-CCCCCCgcagccagcgcaCGGCgagCCAGGUg -3'
miRNA:   3'- cuaUGGCuGGGGGG------------GCCGa--GGUCUAg -5'
5425 3' -60.1 NC_001798.1 + 18581 0.67 0.649357
Target:  5'- --gGCCGugugauagcaagcaGCCCCCCCGGgUCCGcGcgCc -3'
miRNA:   3'- cuaUGGC--------------UGGGGGGGCCgAGGU-CuaG- -5'
5425 3' -60.1 NC_001798.1 + 19034 0.7 0.51476
Target:  5'- ---cCCGGCCCCCaCCGGCUauaCCAccuguggguGGUCg -3'
miRNA:   3'- cuauGGCUGGGGG-GGCCGA---GGU---------CUAG- -5'
5425 3' -60.1 NC_001798.1 + 21475 0.7 0.524298
Target:  5'- ---cCCG-UCCCCCCGGCcggccccCCGGGUCa -3'
miRNA:   3'- cuauGGCuGGGGGGGCCGa------GGUCUAG- -5'
5425 3' -60.1 NC_001798.1 + 22128 0.66 0.711474
Target:  5'- --cGCCGGCCCCUuuGGggCCGGc-- -3'
miRNA:   3'- cuaUGGCUGGGGGggCCgaGGUCuag -5'
5425 3' -60.1 NC_001798.1 + 22806 0.71 0.441355
Target:  5'- --gACCGGCggCCCCGGauCUCCGGAUCc -3'
miRNA:   3'- cuaUGGCUGggGGGGCC--GAGGUCUAG- -5'
5425 3' -60.1 NC_001798.1 + 22947 0.74 0.293918
Target:  5'- cGAUGCCGugCCgacgaggcggCCCCGGCgUCCGGGg- -3'
miRNA:   3'- -CUAUGGCugGG----------GGGGCCG-AGGUCUag -5'
5425 3' -60.1 NC_001798.1 + 23609 0.74 0.307465
Target:  5'- --gGCCGAgCCCgCCCCGGC-CCGGAc- -3'
miRNA:   3'- cuaUGGCU-GGG-GGGGCCGaGGUCUag -5'
5425 3' -60.1 NC_001798.1 + 27863 0.69 0.563068
Target:  5'- ---cCCGACgCgCUCCGGCUCCGGGc- -3'
miRNA:   3'- cuauGGCUGgG-GGGGCCGAGGUCUag -5'
5425 3' -60.1 NC_001798.1 + 27948 0.7 0.524298
Target:  5'- --cGCCGGCCgCgCCCCGGCgcUCCAGc-- -3'
miRNA:   3'- cuaUGGCUGG-G-GGGGCCG--AGGUCuag -5'
5425 3' -60.1 NC_001798.1 + 27971 0.66 0.730762
Target:  5'- --nGCCGugCCgcgCCCCGGCgcUCCAGc-- -3'
miRNA:   3'- cuaUGGCugGG---GGGGCCG--AGGUCuag -5'
5425 3' -60.1 NC_001798.1 + 28650 0.69 0.582749
Target:  5'- --gGCCGACCgCgaCCGGUUCCGGcgCc -3'
miRNA:   3'- cuaUGGCUGGgGg-GGCCGAGGUCuaG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.