miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5425 5' -54.9 NC_001798.1 + 129677 0.66 0.945672
Target:  5'- gUGGUcacCCGGGCGCCGG-GGCCcCa-- -3'
miRNA:   3'- -ACCAa--GGCUUGUGGCCaCUGGuGcua -5'
5425 5' -54.9 NC_001798.1 + 66855 0.66 0.945672
Target:  5'- gGGuUUCCGGggagucgccgggGCGCCGG-GGCUugGGa -3'
miRNA:   3'- aCC-AAGGCU------------UGUGGCCaCUGGugCUa -5'
5425 5' -54.9 NC_001798.1 + 115618 0.66 0.941123
Target:  5'- gGGUcgCCGAGUGCCaGaUGACCGCGGa -3'
miRNA:   3'- aCCAa-GGCUUGUGGcC-ACUGGUGCUa -5'
5425 5' -54.9 NC_001798.1 + 3893 0.66 0.941123
Target:  5'- gGGggCgGGGgGCCGGccccgGGCCACGGc -3'
miRNA:   3'- aCCaaGgCUUgUGGCCa----CUGGUGCUa -5'
5425 5' -54.9 NC_001798.1 + 132832 0.66 0.940655
Target:  5'- cGGUUCUGGggccacgACGCCGcGcUGACCcCGAg -3'
miRNA:   3'- aCCAAGGCU-------UGUGGC-C-ACUGGuGCUa -5'
5425 5' -54.9 NC_001798.1 + 114940 0.66 0.938279
Target:  5'- aGGUggaggacaccgaggCCGAcguGCCGGUGACCuACGGc -3'
miRNA:   3'- aCCAa-------------GGCUug-UGGCCACUGG-UGCUa -5'
5425 5' -54.9 NC_001798.1 + 23667 0.66 0.936334
Target:  5'- cGGgcCCGcGCGgCGGUGGCCggccGCGAc -3'
miRNA:   3'- aCCaaGGCuUGUgGCCACUGG----UGCUa -5'
5425 5' -54.9 NC_001798.1 + 111778 0.66 0.936334
Target:  5'- gGGggCgCGggUGCCcGUGAUCACGAc -3'
miRNA:   3'- aCCaaG-GCuuGUGGcCACUGGUGCUa -5'
5425 5' -54.9 NC_001798.1 + 74398 0.66 0.936334
Target:  5'- gGGggCCGuGGCGCCGGcggaccUGACCGCc-- -3'
miRNA:   3'- aCCaaGGC-UUGUGGCC------ACUGGUGcua -5'
5425 5' -54.9 NC_001798.1 + 79124 0.66 0.931305
Target:  5'- gGGcgCCGAGCGCgCGGaGGCCGUGGa -3'
miRNA:   3'- aCCaaGGCUUGUG-GCCaCUGGUGCUa -5'
5425 5' -54.9 NC_001798.1 + 126934 0.66 0.926034
Target:  5'- gUGGUguUCCuGAACACCaGGUGcgggaucagccACCugGAc -3'
miRNA:   3'- -ACCA--AGG-CUUGUGG-CCAC-----------UGGugCUa -5'
5425 5' -54.9 NC_001798.1 + 7168 0.66 0.925494
Target:  5'- cGcUUCCGAccgacgggcccccGCACCGGggcggcGACCAUGAUc -3'
miRNA:   3'- aCcAAGGCU-------------UGUGGCCa-----CUGGUGCUA- -5'
5425 5' -54.9 NC_001798.1 + 68446 0.67 0.920521
Target:  5'- uUGGcucgCCGAGCACCGcGggGAUUGCGAg -3'
miRNA:   3'- -ACCaa--GGCUUGUGGC-Ca-CUGGUGCUa -5'
5425 5' -54.9 NC_001798.1 + 6818 0.67 0.914766
Target:  5'- aGGcggCCaGAACugCGGUGACCGaccCGGa -3'
miRNA:   3'- aCCaa-GG-CUUGugGCCACUGGU---GCUa -5'
5425 5' -54.9 NC_001798.1 + 113295 0.67 0.908771
Target:  5'- cUGGUccucaagCCGcuggaGCUGGUGGCCGCGGg -3'
miRNA:   3'- -ACCAa------GGCuug--UGGCCACUGGUGCUa -5'
5425 5' -54.9 NC_001798.1 + 54562 0.67 0.908771
Target:  5'- gGGUcCCGAGCccugcgccgGCCGGccGGCCACGu- -3'
miRNA:   3'- aCCAaGGCUUG---------UGGCCa-CUGGUGCua -5'
5425 5' -54.9 NC_001798.1 + 85043 0.68 0.875274
Target:  5'- gGGUgccgUCGAGCGCCGccGugCGCGAa -3'
miRNA:   3'- aCCAa---GGCUUGUGGCcaCugGUGCUa -5'
5425 5' -54.9 NC_001798.1 + 149987 0.68 0.874546
Target:  5'- cGGcgCCcgcGGACGCCGGggcgagcggcccgUGGCCGCGGUc -3'
miRNA:   3'- aCCaaGG---CUUGUGGCC-------------ACUGGUGCUA- -5'
5425 5' -54.9 NC_001798.1 + 4736 0.68 0.867897
Target:  5'- cGGccuccCCGGACGCCGG-GGCCGCc-- -3'
miRNA:   3'- aCCaa---GGCUUGUGGCCaCUGGUGcua -5'
5425 5' -54.9 NC_001798.1 + 125453 0.68 0.867897
Target:  5'- gUGGagcgUCCcGACGcCCGG-GACCACGGUc -3'
miRNA:   3'- -ACCa---AGGcUUGU-GGCCaCUGGUGCUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.