miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5425 5' -54.9 NC_001798.1 + 109454 0.69 0.819351
Target:  5'- aGGcgcgccUCGGGCAuCUGGUGGCCGCGAUc -3'
miRNA:   3'- aCCaa----GGCUUGU-GGCCACUGGUGCUA- -5'
5425 5' -54.9 NC_001798.1 + 35397 0.7 0.755046
Target:  5'- gUGGggCCGGcCGCCGGaUGcCCGCGGg -3'
miRNA:   3'- -ACCaaGGCUuGUGGCC-ACuGGUGCUa -5'
5425 5' -54.9 NC_001798.1 + 34217 0.71 0.745346
Target:  5'- gUGGaUCCGAacACGCCGGau-CCGCGAa -3'
miRNA:   3'- -ACCaAGGCU--UGUGGCCacuGGUGCUa -5'
5425 5' -54.9 NC_001798.1 + 54369 0.71 0.715684
Target:  5'- cGGcgUCCGGccCACCGGggGGCCGCGGc -3'
miRNA:   3'- aCCa-AGGCUu-GUGGCCa-CUGGUGCUa -5'
5425 5' -54.9 NC_001798.1 + 15282 0.71 0.705639
Target:  5'- gGGUUCCGGGCGuggCGGUGGUCGCGGc -3'
miRNA:   3'- aCCAAGGCUUGUg--GCCACUGGUGCUa -5'
5425 5' -54.9 NC_001798.1 + 130511 0.71 0.695532
Target:  5'- aGGccaggCCGAcgAUGCCGGUGGCgGCGAUg -3'
miRNA:   3'- aCCaa---GGCU--UGUGGCCACUGgUGCUA- -5'
5425 5' -54.9 NC_001798.1 + 117566 0.72 0.68537
Target:  5'- aGGUgCCGcggcGCGCCGGcaugGACCACGGg -3'
miRNA:   3'- aCCAaGGCu---UGUGGCCa---CUGGUGCUa -5'
5425 5' -54.9 NC_001798.1 + 39788 0.72 0.675165
Target:  5'- cUGGUcCCGAggcgcgaccacACGCCGGUGGUCGCGGg -3'
miRNA:   3'- -ACCAaGGCU-----------UGUGGCCACUGGUGCUa -5'
5425 5' -54.9 NC_001798.1 + 98559 0.74 0.562386
Target:  5'- cUGGUcguggGGGCGCUGGUGGCCGCGGUg -3'
miRNA:   3'- -ACCAagg--CUUGUGGCCACUGGUGCUA- -5'
5425 5' -54.9 NC_001798.1 + 90378 0.75 0.512505
Target:  5'- aGGUUCCGAACGCCGucgggGGgCGCGGUu -3'
miRNA:   3'- aCCAAGGCUUGUGGCca---CUgGUGCUA- -5'
5425 5' -54.9 NC_001798.1 + 28663 0.77 0.419023
Target:  5'- cGGUUCCG-GCGCCGcGUGGCgGCGGc -3'
miRNA:   3'- aCCAAGGCuUGUGGC-CACUGgUGCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.