miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5425 5' -54.9 NC_001798.1 + 3893 0.66 0.941123
Target:  5'- gGGggCgGGGgGCCGGccccgGGCCACGGc -3'
miRNA:   3'- aCCaaGgCUUgUGGCCa----CUGGUGCUa -5'
5425 5' -54.9 NC_001798.1 + 4736 0.68 0.867897
Target:  5'- cGGccuccCCGGACGCCGG-GGCCGCc-- -3'
miRNA:   3'- aCCaa---GGCUUGUGGCCaCUGGUGcua -5'
5425 5' -54.9 NC_001798.1 + 6818 0.67 0.914766
Target:  5'- aGGcggCCaGAACugCGGUGACCGaccCGGa -3'
miRNA:   3'- aCCaa-GG-CUUGugGCCACUGGU---GCUa -5'
5425 5' -54.9 NC_001798.1 + 7168 0.66 0.925494
Target:  5'- cGcUUCCGAccgacgggcccccGCACCGGggcggcGACCAUGAUc -3'
miRNA:   3'- aCcAAGGCU-------------UGUGGCCa-----CUGGUGCUA- -5'
5425 5' -54.9 NC_001798.1 + 15282 0.71 0.705639
Target:  5'- gGGUUCCGGGCGuggCGGUGGUCGCGGc -3'
miRNA:   3'- aCCAAGGCUUGUg--GCCACUGGUGCUa -5'
5425 5' -54.9 NC_001798.1 + 23667 0.66 0.936334
Target:  5'- cGGgcCCGcGCGgCGGUGGCCggccGCGAc -3'
miRNA:   3'- aCCaaGGCuUGUgGCCACUGG----UGCUa -5'
5425 5' -54.9 NC_001798.1 + 28663 0.77 0.419023
Target:  5'- cGGUUCCG-GCGCCGcGUGGCgGCGGc -3'
miRNA:   3'- aCCAAGGCuUGUGGC-CACUGgUGCUa -5'
5425 5' -54.9 NC_001798.1 + 34217 0.71 0.745346
Target:  5'- gUGGaUCCGAacACGCCGGau-CCGCGAa -3'
miRNA:   3'- -ACCaAGGCU--UGUGGCCacuGGUGCUa -5'
5425 5' -54.9 NC_001798.1 + 35397 0.7 0.755046
Target:  5'- gUGGggCCGGcCGCCGGaUGcCCGCGGg -3'
miRNA:   3'- -ACCaaGGCUuGUGGCC-ACuGGUGCUa -5'
5425 5' -54.9 NC_001798.1 + 39788 0.72 0.675165
Target:  5'- cUGGUcCCGAggcgcgaccacACGCCGGUGGUCGCGGg -3'
miRNA:   3'- -ACCAaGGCU-----------UGUGGCCACUGGUGCUa -5'
5425 5' -54.9 NC_001798.1 + 54369 0.71 0.715684
Target:  5'- cGGcgUCCGGccCACCGGggGGCCGCGGc -3'
miRNA:   3'- aCCa-AGGCUu-GUGGCCa-CUGGUGCUa -5'
5425 5' -54.9 NC_001798.1 + 54562 0.67 0.908771
Target:  5'- gGGUcCCGAGCccugcgccgGCCGGccGGCCACGu- -3'
miRNA:   3'- aCCAaGGCUUG---------UGGCCa-CUGGUGCua -5'
5425 5' -54.9 NC_001798.1 + 66855 0.66 0.945672
Target:  5'- gGGuUUCCGGggagucgccgggGCGCCGG-GGCUugGGa -3'
miRNA:   3'- aCC-AAGGCU------------UGUGGCCaCUGGugCUa -5'
5425 5' -54.9 NC_001798.1 + 68446 0.67 0.920521
Target:  5'- uUGGcucgCCGAGCACCGcGggGAUUGCGAg -3'
miRNA:   3'- -ACCaa--GGCUUGUGGC-Ca-CUGGUGCUa -5'
5425 5' -54.9 NC_001798.1 + 74398 0.66 0.936334
Target:  5'- gGGggCCGuGGCGCCGGcggaccUGACCGCc-- -3'
miRNA:   3'- aCCaaGGC-UUGUGGCC------ACUGGUGcua -5'
5425 5' -54.9 NC_001798.1 + 79124 0.66 0.931305
Target:  5'- gGGcgCCGAGCGCgCGGaGGCCGUGGa -3'
miRNA:   3'- aCCaaGGCUUGUG-GCCaCUGGUGCUa -5'
5425 5' -54.9 NC_001798.1 + 85043 0.68 0.875274
Target:  5'- gGGUgccgUCGAGCGCCGccGugCGCGAa -3'
miRNA:   3'- aCCAa---GGCUUGUGGCcaCugGUGCUa -5'
5425 5' -54.9 NC_001798.1 + 90378 0.75 0.512505
Target:  5'- aGGUUCCGAACGCCGucgggGGgCGCGGUu -3'
miRNA:   3'- aCCAAGGCUUGUGGCca---CUgGUGCUA- -5'
5425 5' -54.9 NC_001798.1 + 98559 0.74 0.562386
Target:  5'- cUGGUcguggGGGCGCUGGUGGCCGCGGUg -3'
miRNA:   3'- -ACCAagg--CUUGUGGCCACUGGUGCUA- -5'
5425 5' -54.9 NC_001798.1 + 109454 0.69 0.819351
Target:  5'- aGGcgcgccUCGGGCAuCUGGUGGCCGCGAUc -3'
miRNA:   3'- aCCaa----GGCUUGU-GGCCACUGGUGCUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.