miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5425 5' -54.9 NC_001798.1 + 111778 0.66 0.936334
Target:  5'- gGGggCgCGggUGCCcGUGAUCACGAc -3'
miRNA:   3'- aCCaaG-GCuuGUGGcCACUGGUGCUa -5'
5425 5' -54.9 NC_001798.1 + 113295 0.67 0.908771
Target:  5'- cUGGUccucaagCCGcuggaGCUGGUGGCCGCGGg -3'
miRNA:   3'- -ACCAa------GGCuug--UGGCCACUGGUGCUa -5'
5425 5' -54.9 NC_001798.1 + 114940 0.66 0.938279
Target:  5'- aGGUggaggacaccgaggCCGAcguGCCGGUGACCuACGGc -3'
miRNA:   3'- aCCAa-------------GGCUug-UGGCCACUGG-UGCUa -5'
5425 5' -54.9 NC_001798.1 + 115618 0.66 0.941123
Target:  5'- gGGUcgCCGAGUGCCaGaUGACCGCGGa -3'
miRNA:   3'- aCCAa-GGCUUGUGGcC-ACUGGUGCUa -5'
5425 5' -54.9 NC_001798.1 + 117566 0.72 0.68537
Target:  5'- aGGUgCCGcggcGCGCCGGcaugGACCACGGg -3'
miRNA:   3'- aCCAaGGCu---UGUGGCCa---CUGGUGCUa -5'
5425 5' -54.9 NC_001798.1 + 125453 0.68 0.867897
Target:  5'- gUGGagcgUCCcGACGcCCGG-GACCACGGUc -3'
miRNA:   3'- -ACCa---AGGcUUGU-GGCCaCUGGUGCUA- -5'
5425 5' -54.9 NC_001798.1 + 126934 0.66 0.926034
Target:  5'- gUGGUguUCCuGAACACCaGGUGcgggaucagccACCugGAc -3'
miRNA:   3'- -ACCA--AGG-CUUGUGG-CCAC-----------UGGugCUa -5'
5425 5' -54.9 NC_001798.1 + 129677 0.66 0.945672
Target:  5'- gUGGUcacCCGGGCGCCGG-GGCCcCa-- -3'
miRNA:   3'- -ACCAa--GGCUUGUGGCCaCUGGuGcua -5'
5425 5' -54.9 NC_001798.1 + 130511 0.71 0.695532
Target:  5'- aGGccaggCCGAcgAUGCCGGUGGCgGCGAUg -3'
miRNA:   3'- aCCaa---GGCU--UGUGGCCACUGgUGCUA- -5'
5425 5' -54.9 NC_001798.1 + 132832 0.66 0.940655
Target:  5'- cGGUUCUGGggccacgACGCCGcGcUGACCcCGAg -3'
miRNA:   3'- aCCAAGGCU-------UGUGGC-C-ACUGGuGCUa -5'
5425 5' -54.9 NC_001798.1 + 149987 0.68 0.874546
Target:  5'- cGGcgCCcgcGGACGCCGGggcgagcggcccgUGGCCGCGGUc -3'
miRNA:   3'- aCCaaGG---CUUGUGGCC-------------ACUGGUGCUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.