miRNA display CGI


Results 1 - 20 of 386 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5427 3' -60.4 NC_001798.1 + 85039 0.66 0.763719
Target:  5'- cCGggG-GUGCCGuCGagcGCCGcCGUGCGCg -3'
miRNA:   3'- -GCuuCgCGCGGU-GC---UGGUcGCGCGCG- -5'
5427 3' -60.4 NC_001798.1 + 68222 0.66 0.763719
Target:  5'- gCGcAGGCcCGCCACc-CCGcCGCGCGCc -3'
miRNA:   3'- -GC-UUCGcGCGGUGcuGGUcGCGCGCG- -5'
5427 3' -60.4 NC_001798.1 + 111405 0.66 0.763719
Target:  5'- uGGGuCGgGCuCAgGGCCAGCGCG-GCc -3'
miRNA:   3'- gCUUcGCgCG-GUgCUGGUCGCGCgCG- -5'
5427 3' -60.4 NC_001798.1 + 24486 0.66 0.763719
Target:  5'- uGggGCgccugaGCGCCGCG-CCcGCcucCGCGCc -3'
miRNA:   3'- gCuuCG------CGCGGUGCuGGuCGc--GCGCG- -5'
5427 3' -60.4 NC_001798.1 + 25596 0.66 0.763719
Target:  5'- gGccGCGgGCCGCGcCgGGgGCGgGCc -3'
miRNA:   3'- gCuuCGCgCGGUGCuGgUCgCGCgCG- -5'
5427 3' -60.4 NC_001798.1 + 37136 0.66 0.763719
Target:  5'- gCGAGGUGUGUgAgcgUGGCCGcucGCGCcGCGCc -3'
miRNA:   3'- -GCUUCGCGCGgU---GCUGGU---CGCG-CGCG- -5'
5427 3' -60.4 NC_001798.1 + 73967 0.66 0.763719
Target:  5'- ---cGCGCgGCCGCGGgcuCCGGgcCGCcGCGCa -3'
miRNA:   3'- gcuuCGCG-CGGUGCU---GGUC--GCG-CGCG- -5'
5427 3' -60.4 NC_001798.1 + 76742 0.66 0.763719
Target:  5'- gGAGGCGaUGCUcaACGACgcgCGGgaGCGCGCc -3'
miRNA:   3'- gCUUCGC-GCGG--UGCUG---GUCg-CGCGCG- -5'
5427 3' -60.4 NC_001798.1 + 97360 0.66 0.763719
Target:  5'- uCGAGGCGCugauacgcgcguGCUACGACCAccaccugacGaCGC-CGCu -3'
miRNA:   3'- -GCUUCGCG------------CGGUGCUGGU---------C-GCGcGCG- -5'
5427 3' -60.4 NC_001798.1 + 134674 0.66 0.763719
Target:  5'- cCGcAGCGgGUCACGGC--GCGgGUGCu -3'
miRNA:   3'- -GCuUCGCgCGGUGCUGguCGCgCGCG- -5'
5427 3' -60.4 NC_001798.1 + 28069 0.66 0.763719
Target:  5'- uCGAgAGCGCGCCggccGCGuccucgcuCCuGCG-GCGCu -3'
miRNA:   3'- -GCU-UCGCGCGG----UGCu-------GGuCGCgCGCG- -5'
5427 3' -60.4 NC_001798.1 + 24909 0.66 0.763719
Target:  5'- --cGGCGCuGCCGCGgaGCCcGCGCcUGCu -3'
miRNA:   3'- gcuUCGCG-CGGUGC--UGGuCGCGcGCG- -5'
5427 3' -60.4 NC_001798.1 + 22116 0.66 0.763719
Target:  5'- aCGggGCGaccuCGCCggccccuuuGgGGCCGGCGgGgGCc -3'
miRNA:   3'- -GCuuCGC----GCGG---------UgCUGGUCGCgCgCG- -5'
5427 3' -60.4 NC_001798.1 + 110880 0.66 0.763719
Target:  5'- aGcAGCGCGuCCAgGuacCCGGCgguucGCGUGCg -3'
miRNA:   3'- gCuUCGCGC-GGUgCu--GGUCG-----CGCGCG- -5'
5427 3' -60.4 NC_001798.1 + 97475 0.66 0.763719
Target:  5'- gGggGCcgGCGgCGCGACCGGgG-GgGCc -3'
miRNA:   3'- gCuuCG--CGCgGUGCUGGUCgCgCgCG- -5'
5427 3' -60.4 NC_001798.1 + 60229 0.66 0.761888
Target:  5'- gGAcGaCGCGCCcuccucgcggGCGGCaaaggugacgcaGGUGCGCGCg -3'
miRNA:   3'- gCUuC-GCGCGG----------UGCUGg-----------UCGCGCGCG- -5'
5427 3' -60.4 NC_001798.1 + 27148 0.66 0.760971
Target:  5'- aCGggGCGCgggagggaggggcuGCUGCGagcucgggGCC-GCGgGCGCg -3'
miRNA:   3'- -GCuuCGCG--------------CGGUGC--------UGGuCGCgCGCG- -5'
5427 3' -60.4 NC_001798.1 + 62267 0.66 0.754522
Target:  5'- cCGAucccaGGCcCGCCggGCGGcCCGGCgggaGCGCGCc -3'
miRNA:   3'- -GCU-----UCGcGCGG--UGCU-GGUCG----CGCGCG- -5'
5427 3' -60.4 NC_001798.1 + 51438 0.66 0.754522
Target:  5'- cCGggGCGCGgccuuCCGCGACgGucgagauucucGCGgGcCGCg -3'
miRNA:   3'- -GCuuCGCGC-----GGUGCUGgU-----------CGCgC-GCG- -5'
5427 3' -60.4 NC_001798.1 + 23346 0.66 0.754522
Target:  5'- --cGGCGCGCCcccCG-CCGGCGCuCGg -3'
miRNA:   3'- gcuUCGCGCGGu--GCuGGUCGCGcGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.