miRNA display CGI


Results 21 - 40 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5428 5' -61.1 NC_001798.1 + 26395 0.66 0.67561
Target:  5'- gCGCGCGGGCGCUgcucgagCCCGaCGgCGAc-- -3'
miRNA:   3'- -GCGCGCCCGUGG-------GGGCgGUgGUUuuu -5'
5428 5' -61.1 NC_001798.1 + 127505 0.66 0.666677
Target:  5'- aCGUGCcggaGGGCAUCCggCGCCACCu---- -3'
miRNA:   3'- -GCGCG----CCCGUGGGg-GCGGUGGuuuuu -5'
5428 5' -61.1 NC_001798.1 + 81766 0.66 0.666677
Target:  5'- uCGCGCGcGCcccggGCCUCCGCCccccCCGAGGGg -3'
miRNA:   3'- -GCGCGCcCG-----UGGGGGCGGu---GGUUUUU- -5'
5428 5' -61.1 NC_001798.1 + 72594 0.66 0.666677
Target:  5'- uCGCG-GGGCugcgguCCgUCGUCACCGAGAc -3'
miRNA:   3'- -GCGCgCCCGu-----GGgGGCGGUGGUUUUu -5'
5428 5' -61.1 NC_001798.1 + 87183 0.66 0.666677
Target:  5'- aGCGCGGGCGacgggcggCUgGCCACCGu--- -3'
miRNA:   3'- gCGCGCCCGUgg------GGgCGGUGGUuuuu -5'
5428 5' -61.1 NC_001798.1 + 53327 0.66 0.666677
Target:  5'- gGCGC-GGCACCauaacaCCGUCcCCGAGAGc -3'
miRNA:   3'- gCGCGcCCGUGGg-----GGCGGuGGUUUUU- -5'
5428 5' -61.1 NC_001798.1 + 23921 0.66 0.656726
Target:  5'- gGCcuCGGGCGCCCCggCGCCcgugugggcGCCGAGc- -3'
miRNA:   3'- gCGc-GCCCGUGGGG--GCGG---------UGGUUUuu -5'
5428 5' -61.1 NC_001798.1 + 33185 0.66 0.656726
Target:  5'- gGgGCGGGCacgagaagccGCCCCCaCCcCCGAGGc -3'
miRNA:   3'- gCgCGCCCG----------UGGGGGcGGuGGUUUUu -5'
5428 5' -61.1 NC_001798.1 + 34879 0.66 0.656726
Target:  5'- gGCGcCGGGCggcuacccgggACCCCCGgCCgggaAUCGAAAAa -3'
miRNA:   3'- gCGC-GCCCG-----------UGGGGGC-GG----UGGUUUUU- -5'
5428 5' -61.1 NC_001798.1 + 56563 0.66 0.656726
Target:  5'- aCGCGaCGGcCACCUucuCCGCCGgCGAGGAg -3'
miRNA:   3'- -GCGC-GCCcGUGGG---GGCGGUgGUUUUU- -5'
5428 5' -61.1 NC_001798.1 + 105211 0.66 0.656726
Target:  5'- gGCGaCGGcGCugCCCCGuCCGCa----- -3'
miRNA:   3'- gCGC-GCC-CGugGGGGC-GGUGguuuuu -5'
5428 5' -61.1 NC_001798.1 + 24822 0.66 0.656726
Target:  5'- uGCGCGGGgACCUgCGCgugGCCGGc-- -3'
miRNA:   3'- gCGCGCCCgUGGGgGCGg--UGGUUuuu -5'
5428 5' -61.1 NC_001798.1 + 54610 0.66 0.656726
Target:  5'- gGcCG-GGGCGCCCCCG-CGCCu---- -3'
miRNA:   3'- gC-GCgCCCGUGGGGGCgGUGGuuuuu -5'
5428 5' -61.1 NC_001798.1 + 22289 0.66 0.656726
Target:  5'- cCGCGCGGGCggagcggcggcgGCgCgaccaacgggCCGCCGCCAcgGAc -3'
miRNA:   3'- -GCGCGCCCG------------UGgG----------GGCGGUGGUuuUU- -5'
5428 5' -61.1 NC_001798.1 + 95016 0.66 0.646756
Target:  5'- gGCGCGGGCcuggagGCCggggCCCGCgCGCUGAu-- -3'
miRNA:   3'- gCGCGCCCG------UGG----GGGCG-GUGGUUuuu -5'
5428 5' -61.1 NC_001798.1 + 127184 0.66 0.646756
Target:  5'- gGCaCGGGUACaaCCaGCCACCGGAGc -3'
miRNA:   3'- gCGcGCCCGUGggGG-CGGUGGUUUUu -5'
5428 5' -61.1 NC_001798.1 + 139390 0.66 0.646756
Target:  5'- aCGUcCGGGCACCagguCCGCCcCCAc--- -3'
miRNA:   3'- -GCGcGCCCGUGGg---GGCGGuGGUuuuu -5'
5428 5' -61.1 NC_001798.1 + 75026 0.66 0.646756
Target:  5'- cCGCGCccaagaagaaGGC-CCCCguCGCCGCCGAGGu -3'
miRNA:   3'- -GCGCGc---------CCGuGGGG--GCGGUGGUUUUu -5'
5428 5' -61.1 NC_001798.1 + 3279 0.66 0.646756
Target:  5'- cCGCGCGcucgucggccGGCGaCgCCGCCGCCGAc-- -3'
miRNA:   3'- -GCGCGC----------CCGUgGgGGCGGUGGUUuuu -5'
5428 5' -61.1 NC_001798.1 + 40947 0.66 0.640768
Target:  5'- uCGCGCaGGCGCCCCgggagaugagagcggUGCCgacgaugagACCGAGGg -3'
miRNA:   3'- -GCGCGcCCGUGGGG---------------GCGG---------UGGUUUUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.